Strain Fitness in Variovorax sp. SCN45 around GFF7067

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7064 and GFF7065 are separated by 68 nucleotidesGFF7065 and GFF7066 overlap by 4 nucleotidesGFF7066 and GFF7067 are separated by 132 nucleotidesGFF7067 and GFF7068 are separated by 117 nucleotidesGFF7068 and GFF7069 are separated by 10 nucleotides GFF7064 - Glutamate--cysteine ligase (EC 6.3.2.2), at 22,571 to 24,076 GFF7064 GFF7065 - no description, at 24,145 to 24,279 GFF7065 GFF7066 - Two-component transcriptional response regulator receiver domain, at 24,276 to 24,656 GFF7066 GFF7067 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 24,789 to 25,718 GFF7067 GFF7068 - hypothetical protein, at 25,836 to 26,258 GFF7068 GFF7069 - Transcriptional regulator, at 26,269 to 26,736 GFF7069 Position (kb) 24 25 26Strain fitness (log2 ratio) -1 0 1 2 3at 23.843 kb on + strand, within GFF7064at 24.005 kb on + strandat 24.005 kb on + strandat 24.005 kb on + strandat 24.005 kb on + strandat 24.006 kb on - strandat 24.006 kb on - strandat 24.017 kb on + strandat 24.017 kb on + strandat 24.017 kb on + strandat 24.017 kb on + strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.074 kb on + strandat 24.075 kb on - strandat 24.151 kb on + strandat 24.151 kb on + strandat 24.152 kb on - strandat 24.152 kb on - strandat 24.241 kb on - strand, within GFF7065at 24.291 kb on + strandat 24.291 kb on + strandat 24.292 kb on - strandat 24.292 kb on - strandat 24.534 kb on + strand, within GFF7066at 24.534 kb on + strand, within GFF7066at 24.534 kb on + strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.624 kb on + strandat 24.624 kb on + strandat 24.625 kb on - strandat 24.770 kb on - strandat 25.233 kb on + strand, within GFF7067at 25.272 kb on + strand, within GFF7067at 25.296 kb on + strand, within GFF7067at 25.296 kb on + strand, within GFF7067at 25.296 kb on + strand, within GFF7067at 25.297 kb on - strand, within GFF7067at 25.297 kb on - strand, within GFF7067at 25.297 kb on - strand, within GFF7067at 25.297 kb on - strand, within GFF7067at 25.428 kb on + strand, within GFF7067at 25.771 kb on - strandat 25.974 kb on + strand, within GFF7068at 25.974 kb on + strand, within GFF7068at 25.974 kb on + strand, within GFF7068at 25.974 kb on + strand, within GFF7068at 25.974 kb on + strand, within GFF7068at 25.974 kb on + strand, within GFF7068at 25.975 kb on - strand, within GFF7068at 25.975 kb on - strand, within GFF7068at 25.975 kb on - strand, within GFF7068at 25.975 kb on - strand, within GFF7068at 26.142 kb on + strand, within GFF7068at 26.148 kb on + strand, within GFF7068at 26.148 kb on + strand, within GFF7068at 26.148 kb on + strand, within GFF7068at 26.148 kb on + strand, within GFF7068at 26.148 kb on + strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.149 kb on - strand, within GFF7068at 26.193 kb on + strand, within GFF7068at 26.193 kb on + strand, within GFF7068at 26.332 kb on + strand, within GFF7069at 26.332 kb on + strand, within GFF7069at 26.389 kb on + strand, within GFF7069at 26.389 kb on + strand, within GFF7069at 26.390 kb on - strand, within GFF7069at 26.471 kb on - strand, within GFF7069at 26.608 kb on + strand, within GFF7069at 26.609 kb on - strand, within GFF7069

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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23,843 + GFF7064 0.84 -0.1
24,005 + -0.4
24,005 + +0.5
24,005 + -0.4
24,005 + -0.8
24,006 - +1.6
24,006 - -0.5
24,017 + +0.6
24,017 + -0.1
24,017 + +0.9
24,017 + -0.1
24,018 - +0.6
24,018 - -0.0
24,018 - +0.5
24,018 - +0.8
24,018 - -0.1
24,018 - -0.8
24,018 - -0.1
24,018 - +0.9
24,018 - +0.0
24,018 - -0.6
24,018 - -0.2
24,018 - -1.2
24,074 + +0.5
24,075 - -0.0
24,151 + -0.5
24,151 + -0.1
24,152 - -0.9
24,152 - +0.1
24,241 - GFF7065 0.71 +0.9
24,291 + -0.2
24,291 + +0.6
24,292 - +0.3
24,292 - -0.5
24,534 + GFF7066 0.68 -0.5
24,534 + GFF7066 0.68 -0.6
24,534 + GFF7066 0.68 +0.0
24,535 - GFF7066 0.68 -0.2
24,535 - GFF7066 0.68 +0.2
24,535 - GFF7066 0.68 -1.2
24,535 - GFF7066 0.68 -0.1
24,535 - GFF7066 0.68 -0.8
24,535 - GFF7066 0.68 -0.2
24,535 - GFF7066 0.68 +1.2
24,624 + -0.4
24,624 + +0.0
24,625 - -1.2
24,770 - -0.3
25,233 + GFF7067 0.48 +0.3
25,272 + GFF7067 0.52 +0.2
25,296 + GFF7067 0.55 -0.2
25,296 + GFF7067 0.55 -0.2
25,296 + GFF7067 0.55 -0.2
25,297 - GFF7067 0.55 +0.6
25,297 - GFF7067 0.55 -0.2
25,297 - GFF7067 0.55 -0.1
25,297 - GFF7067 0.55 -0.8
25,428 + GFF7067 0.69 +1.0
25,771 - +0.5
25,974 + GFF7068 0.33 -0.3
25,974 + GFF7068 0.33 -0.3
25,974 + GFF7068 0.33 -0.6
25,974 + GFF7068 0.33 +0.1
25,974 + GFF7068 0.33 +0.5
25,974 + GFF7068 0.33 -0.8
25,975 - GFF7068 0.33 -0.5
25,975 - GFF7068 0.33 +0.1
25,975 - GFF7068 0.33 -0.5
25,975 - GFF7068 0.33 -1.3
26,142 + GFF7068 0.72 +0.5
26,148 + GFF7068 0.74 -0.8
26,148 + GFF7068 0.74 -0.1
26,148 + GFF7068 0.74 -0.5
26,148 + GFF7068 0.74 +0.0
26,148 + GFF7068 0.74 -0.1
26,149 - GFF7068 0.74 -0.9
26,149 - GFF7068 0.74 -0.6
26,149 - GFF7068 0.74 -0.7
26,149 - GFF7068 0.74 -0.1
26,149 - GFF7068 0.74 -0.8
26,149 - GFF7068 0.74 +1.9
26,149 - GFF7068 0.74 -0.3
26,149 - GFF7068 0.74 -1.1
26,149 - GFF7068 0.74 -0.1
26,193 + GFF7068 0.84 -1.0
26,193 + GFF7068 0.84 -0.9
26,332 + GFF7069 0.13 -0.2
26,332 + GFF7069 0.13 +3.1
26,389 + GFF7069 0.26 -0.1
26,389 + GFF7069 0.26 +0.0
26,390 - GFF7069 0.26 +1.1
26,471 - GFF7069 0.43 -0.0
26,608 + GFF7069 0.72 -1.0
26,609 - GFF7069 0.73 +1.7

Or see this region's nucleotide sequence