Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF703 and GFF704 are separated by 6 nucleotides GFF704 and GFF705 are separated by 83 nucleotides GFF705 and GFF706 are separated by 370 nucleotides
GFF703 - Efflux ABC transporter, permease/ATP-binding protein Atu2242, at 759,400 to 761,256
GFF703
GFF704 - Lactoylglutathione lyase and related lyases, at 761,263 to 761,694
GFF704
GFF705 - Transcriptional regulator, AcrR family, at 761,778 to 762,359
GFF705
GFF706 - hypothetical protein, at 762,730 to 764,142
GFF706
Position (kb) 761
762
763 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.068 kb on - strand, within GFF703 at 761.135 kb on + strand at 761.136 kb on - strand at 761.179 kb on + strand at 761.180 kb on - strand at 761.291 kb on + strand at 761.292 kb on - strand at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.676 kb on - strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.737 kb on - strand at 761.744 kb on - strand at 761.749 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.859 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 762.057 kb on + strand, within GFF705 at 762.058 kb on - strand, within GFF705 at 762.058 kb on - strand, within GFF705 at 762.390 kb on + strand at 762.391 kb on - strand at 762.391 kb on - strand at 762.436 kb on + strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.525 kb on - strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.679 kb on + strand at 762.679 kb on + strand at 762.680 kb on - strand at 762.680 kb on - strand at 762.680 kb on - strand at 762.788 kb on + strand at 762.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 761,035 + GFF703 0.88 -0.3 761,035 + GFF703 0.88 +0.5 761,035 + GFF703 0.88 -0.1 761,035 + GFF703 0.88 -0.1 761,068 - GFF703 0.90 -0.5 761,135 + -0.2 761,136 - -0.9 761,179 + +0.0 761,180 - -0.8 761,291 + -0.9 761,292 - -0.2 761,585 + GFF704 0.75 -0.2 761,585 + GFF704 0.75 -0.1 761,585 + GFF704 0.75 -0.4 761,585 + GFF704 0.75 +0.0 761,585 + GFF704 0.75 +0.9 761,585 + GFF704 0.75 -0.2 761,585 + GFF704 0.75 +0.7 761,585 + GFF704 0.75 +0.1 761,585 + GFF704 0.75 -0.1 761,585 + GFF704 0.75 +0.5 761,585 + GFF704 0.75 -1.2 761,586 - GFF704 0.75 +1.5 761,586 - GFF704 0.75 -0.1 761,586 - GFF704 0.75 +0.4 761,586 - GFF704 0.75 -0.4 761,586 - GFF704 0.75 +0.4 761,630 + GFF704 0.85 +2.0 761,630 + GFF704 0.85 -0.7 761,630 + GFF704 0.85 +0.3 761,631 - GFF704 0.85 -1.4 761,631 - GFF704 0.85 +0.2 761,631 - GFF704 0.85 +0.1 761,631 - GFF704 0.85 -1.1 761,631 - GFF704 0.85 +0.8 761,676 - -0.1 761,678 + -0.5 761,678 + -0.4 761,678 + -0.3 761,678 + -1.0 761,678 + -0.5 761,678 + +0.1 761,679 - +1.5 761,679 - -1.2 761,679 - -0.3 761,679 - +0.2 761,679 - -0.4 761,679 - +0.6 761,679 - -1.4 761,679 - -0.3 761,679 - -0.5 761,679 - +0.1 761,679 - +0.6 761,679 - +2.0 761,737 - +0.5 761,744 - -0.9 761,749 - +0.4 761,784 - -0.0 761,784 - -1.1 761,784 - -0.5 761,824 + +1.5 761,824 + -0.3 761,824 + -1.1 761,824 + -0.5 761,824 + -0.1 761,824 + -0.5 761,825 - +0.1 761,825 - +0.1 761,825 - -0.9 761,825 - -0.2 761,825 - -1.3 761,825 - -0.4 761,859 + GFF705 0.14 +0.9 761,919 + GFF705 0.24 +0.9 761,919 + GFF705 0.24 +0.1 761,919 + GFF705 0.24 -0.2 761,919 + GFF705 0.24 +0.5 761,920 - GFF705 0.24 +0.2 761,920 - GFF705 0.24 +0.1 761,920 - GFF705 0.24 +0.5 762,057 + GFF705 0.48 -0.3 762,058 - GFF705 0.48 -0.0 762,058 - GFF705 0.48 -0.5 762,390 + -0.6 762,391 - -0.4 762,391 - -0.5 762,436 + -0.0 762,437 - -0.1 762,437 - +3.0 762,437 - -0.1 762,437 - -0.9 762,437 - +0.3 762,437 - +0.1 762,437 - -0.2 762,525 - +0.2 762,533 + +0.8 762,533 + -0.0 762,533 + -0.2 762,533 + -0.9 762,533 + -0.9 762,533 + -1.1 762,534 - +0.5 762,534 - -0.6 762,534 - -0.4 762,534 - -0.1 762,534 - -2.1 762,534 - +0.6 762,534 - -0.8 762,679 + -0.1 762,679 + -0.1 762,680 - -0.4 762,680 - -0.5 762,680 - +1.5 762,788 + -0.5 762,789 - -1.7
Or see this region's nucleotide sequence