Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6953 and GFF6954 are separated by 183 nucleotides GFF6954 and GFF6955 are separated by 7 nucleotides GFF6955 and GFF6956 are separated by 260 nucleotides
GFF6953 - Universal stress protein UspA and related nucleotide-binding proteins, at 29,511 to 30,335
GFF6953
GFF6954 - no description, at 30,519 to 30,722
GFF6954
GFF6955 - no description, at 30,730 to 30,864
GFF6955
GFF6956 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 31,125 to 31,820
GFF6956
Position (kb) 30
31 Strain fitness (log2 ratio) -1
0
1
2 at 29.728 kb on + strand, within GFF6953 at 29.729 kb on - strand, within GFF6953 at 29.729 kb on - strand, within GFF6953 at 29.899 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.020 kb on - strand, within GFF6953 at 30.020 kb on - strand, within GFF6953 at 30.020 kb on - strand, within GFF6953 at 30.022 kb on - strand, within GFF6953 at 30.187 kb on + strand, within GFF6953 at 30.187 kb on + strand, within GFF6953 at 31.637 kb on - strand, within GFF6956
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 29,728 + GFF6953 0.26 +1.0 29,729 - GFF6953 0.26 +0.2 29,729 - GFF6953 0.26 +0.0 29,899 + GFF6953 0.47 +0.9 30,019 + GFF6953 0.62 +0.1 30,019 + GFF6953 0.62 +1.2 30,019 + GFF6953 0.62 +1.8 30,019 + GFF6953 0.62 -0.1 30,019 + GFF6953 0.62 -0.2 30,020 - GFF6953 0.62 -0.2 30,020 - GFF6953 0.62 +2.7 30,020 - GFF6953 0.62 +0.6 30,022 - GFF6953 0.62 +0.2 30,187 + GFF6953 0.82 -0.5 30,187 + GFF6953 0.82 +0.5 31,637 - GFF6956 0.74 -0.4
Or see this region's nucleotide sequence