Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6946 and GFF6947 are separated by 21 nucleotides GFF6947 and GFF6948 are separated by 235 nucleotides GFF6948 and GFF6949 are separated by 136 nucleotides
GFF6946 - Sensory box histidine kinase/response regulator, at 21,884 to 24,001
GFF6946
GFF6947 - transcriptional regulator, Crp/Fnr family, at 24,023 to 24,790
GFF6947
GFF6948 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 25,026 to 25,529
GFF6948
GFF6949 - no description, at 25,666 to 26,319
GFF6949
Position (kb) 24
25 Strain fitness (log2 ratio) -1
0
1
2
3 at 23.099 kb on + strand, within GFF6946 at 23.099 kb on + strand, within GFF6946 at 23.099 kb on + strand, within GFF6946 at 23.100 kb on - strand, within GFF6946 at 23.475 kb on + strand, within GFF6946 at 23.475 kb on + strand, within GFF6946 at 23.477 kb on + strand, within GFF6946 at 23.477 kb on + strand, within GFF6946 at 23.477 kb on + strand, within GFF6946 at 23.478 kb on - strand, within GFF6946 at 23.478 kb on - strand, within GFF6946 at 23.478 kb on - strand, within GFF6946 at 23.553 kb on - strand, within GFF6946 at 23.914 kb on - strand at 23.945 kb on + strand at 23.945 kb on + strand at 24.025 kb on - strand at 24.193 kb on - strand, within GFF6947 at 24.193 kb on - strand, within GFF6947 at 24.274 kb on - strand, within GFF6947 at 24.274 kb on - strand, within GFF6947 at 24.475 kb on - strand, within GFF6947 at 24.595 kb on - strand, within GFF6947 at 24.595 kb on - strand, within GFF6947 at 24.625 kb on - strand, within GFF6947 at 24.791 kb on - strand at 24.832 kb on + strand at 24.832 kb on + strand at 24.833 kb on - strand at 24.877 kb on + strand at 24.909 kb on + strand at 25.182 kb on + strand, within GFF6948 at 25.183 kb on - strand, within GFF6948 at 25.330 kb on - strand, within GFF6948 at 25.330 kb on - strand, within GFF6948 at 25.591 kb on + strand at 25.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 23,099 + GFF6946 0.57 +0.2 23,099 + GFF6946 0.57 +0.9 23,099 + GFF6946 0.57 -0.8 23,100 - GFF6946 0.57 +0.5 23,475 + GFF6946 0.75 +0.1 23,475 + GFF6946 0.75 +2.1 23,477 + GFF6946 0.75 +0.7 23,477 + GFF6946 0.75 +1.0 23,477 + GFF6946 0.75 -0.6 23,478 - GFF6946 0.75 +1.4 23,478 - GFF6946 0.75 +1.1 23,478 - GFF6946 0.75 -0.5 23,553 - GFF6946 0.79 +1.8 23,914 - +1.4 23,945 + +0.6 23,945 + +1.6 24,025 - -0.1 24,193 - GFF6947 0.22 +0.7 24,193 - GFF6947 0.22 +0.1 24,274 - GFF6947 0.33 +0.6 24,274 - GFF6947 0.33 -0.1 24,475 - GFF6947 0.59 +0.9 24,595 - GFF6947 0.74 -1.0 24,595 - GFF6947 0.74 +0.1 24,625 - GFF6947 0.78 +3.1 24,791 - +1.0 24,832 + +0.9 24,832 + -0.2 24,833 - -0.4 24,877 + +1.2 24,909 + +0.5 25,182 + GFF6948 0.31 +0.0 25,183 - GFF6948 0.31 -1.7 25,330 - GFF6948 0.60 +0.3 25,330 - GFF6948 0.60 -0.5 25,591 + -0.2 25,591 + +0.3
Or see this region's nucleotide sequence