Strain Fitness in Variovorax sp. SCN45 around GFF6871

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
2,013	+				-0.8
2,013	+				-0.6
2,013	+				-0.4
2,013	+				+0.5
2,013	+				-1.1
2,013	+				+1.1
2,013	+				-0.6
2,014	-				-0.1
2,014	-				-0.3
2,014	-				+0.2
2,014	-				+0.5
2,022	+				-1.7
2,022	+				-0.7
2,022	+				-0.9
2,022	+				-1.2
2,023	-				-0.4
2,023	-				-0.7
2,023	-				+0.7
2,023	-				+0.7
2,023	-				-0.1
2,023	-				+0.2
2,056	-				+0.0
2,145	+		GFF6870	0.19	+0.1
2,145	+		GFF6870	0.19	-1.1
2,145	+		GFF6870	0.19	+1.0
2,146	-		GFF6870	0.19	-1.2
2,146	-		GFF6870	0.19	+0.4
2,146	-		GFF6870	0.19	+0.8
2,163	+		GFF6870	0.21	+0.9
2,163	+		GFF6870	0.21	-0.1
2,163	+		GFF6870	0.21	-0.5
2,163	+		GFF6870	0.21	-0.6
2,164	-		GFF6870	0.21	-0.1
2,164	-		GFF6870	0.21	-0.3
2,164	-		GFF6870	0.21	-0.9
2,234	+		GFF6870	0.28	-0.3
2,234	+		GFF6870	0.28	-0.1
2,234	+		GFF6870	0.28	-0.3
2,235	-		GFF6870	0.28	-0.5
2,235	-		GFF6870	0.28	-0.8
2,235	-		GFF6870	0.28	-0.7
2,235	-		GFF6870	0.28	-0.3
2,355	+		GFF6870	0.41	-0.2
2,355	+		GFF6870	0.41	-0.8
2,355	+		GFF6870	0.41	-0.9
2,355	+		GFF6870	0.41	-1.3
2,356	-		GFF6870	0.41	-0.7
2,356	-		GFF6870	0.41	-0.1
2,356	-		GFF6870	0.41	-0.0
2,356	-		GFF6870	0.41	+0.0
2,356	-		GFF6870	0.41	+0.1
2,356	-		GFF6870	0.41	+1.3
2,385	+		GFF6870	0.44	+0.7
2,386	-		GFF6870	0.44	+0.3
2,386	-		GFF6870	0.44	-1.1
2,386	-		GFF6870	0.44	+1.3
2,386	-		GFF6870	0.44	+0.2
2,386	-		GFF6870	0.44	-1.1
2,386	-		GFF6870	0.44	-0.5
2,412	+		GFF6870	0.47	+0.3
2,412	+		GFF6870	0.47	-1.3
2,412	+		GFF6870	0.47	+0.3
2,412	+		GFF6870	0.47	-1.3
2,412	+		GFF6870	0.47	+0.7
2,412	+		GFF6870	0.47	-1.2
2,413	-		GFF6870	0.47	-0.9
2,413	-		GFF6870	0.47	-2.1
2,413	-		GFF6870	0.47	-0.1
2,413	-		GFF6870	0.47	-1.7
2,413	-		GFF6870	0.47	+1.7
2,413	-		GFF6870	0.47	-0.5
2,413	-		GFF6870	0.47	-0.2
2,413	-		GFF6870	0.47	-0.4
2,413	-		GFF6870	0.47	-1.0
2,612	-		GFF6870	0.68	-0.1
2,612	-		GFF6870	0.68	-0.8
2,645	+		GFF6870	0.71	-0.6
2,645	+		GFF6870	0.71	+0.3
2,645	+		GFF6870	0.71	-1.1
2,645	+		GFF6870	0.71	+0.5
2,646	-		GFF6870	0.71	-0.8
2,799	+		GFF6870	0.87	+0.4
2,799	+		GFF6870	0.87	+0.9
2,799	+		GFF6870	0.87	-1.7
2,799	+		GFF6870	0.87	-1.4
2,799	+		GFF6870	0.87	-0.6
2,799	+		GFF6870	0.87	-0.4
2,799	+		GFF6870	0.87	-0.4
2,799	+		GFF6870	0.87	-0.5
2,799	+		GFF6870	0.87	+0.4
2,800	-		GFF6870	0.87	-0.7
2,800	-		GFF6870	0.87	-0.8
2,800	-		GFF6870	0.87	-0.8
2,800	-		GFF6870	0.87	+0.8
2,928	+				-0.1
2,928	+				+1.1
2,928	+				-1.3
2,928	+				-0.8
2,928	+				+0.3
2,929	-				-0.1
2,929	-				-0.2
2,991	+				-0.6
2,991	+				-0.9
2,991	+				-0.7
2,991	+				-0.5
2,992	-				+0.3
2,992	-				-1.3
2,992	-				-1.1
2,992	-				+0.3
2,992	-				-0.4
2,992	-				-0.1
3,000	+				-0.2
3,000	+				-0.2
3,000	+				-1.3
3,000	+				-0.5
3,000	+				+0.2
3,000	+				-0.7
3,000	+				+1.1
3,000	+				-0.3
3,000	+				+0.1
3,000	+				+1.1
3,000	+				-0.1
3,000	+				-1.7
3,000	+				+0.8
3,000	+				-0.8
3,000	+				-0.9
3,000	+				+0.1
3,000	+				+0.7
3,000	+				+0.7
3,000	+				+0.2
3,000	+				+0.2
3,000	+				-0.2
3,000	+				-0.5
3,001	-				-0.2
3,001	-				-1.0
3,001	-				-0.6
3,001	-				-0.6
3,001	-				-1.1
3,001	-				+0.1
3,001	-				-0.7
3,001	-				-0.4
3,001	-				-0.0
3,001	-				-0.3
3,001	-				-0.6
3,001	-				-1.1
3,001	-				-0.2
3,001	-				-0.4
3,001	-				+0.9
3,033	+		GFF6871	0.11	-0.4
3,034	-		GFF6871	0.11	+0.3
3,123	+		GFF6871	0.20	-0.4
3,123	+		GFF6871	0.20	+0.6
3,123	+		GFF6871	0.20	-0.3
3,124	-		GFF6871	0.20	-0.3
3,124	-		GFF6871	0.20	+0.1
3,124	-		GFF6871	0.20	-1.1
3,130	-		GFF6871	0.21	+0.3
3,172	+		GFF6871	0.25	-1.2
3,172	+		GFF6871	0.25	+1.7
3,173	-		GFF6871	0.26	+1.0
3,174	+		GFF6871	0.26	-1.0
3,174	+		GFF6871	0.26	+0.7
3,175	-		GFF6871	0.26	-0.3
3,175	-		GFF6871	0.26	-1.2
3,175	-		GFF6871	0.26	-0.2
3,175	-		GFF6871	0.26	-1.1
3,180	+		GFF6871	0.26	+0.2
3,198	+		GFF6871	0.28	-0.3
3,198	+		GFF6871	0.28	-0.5
3,198	+		GFF6871	0.28	-1.0
3,198	+		GFF6871	0.28	+0.7
3,198	+		GFF6871	0.28	+0.1
3,198	+		GFF6871	0.28	-0.3
3,199	-		GFF6871	0.28	-1.1
3,199	-		GFF6871	0.28	+1.3
3,327	+		GFF6871	0.42	-0.8
3,328	-		GFF6871	0.42	-0.1
3,328	-		GFF6871	0.42	+0.0
3,328	-		GFF6871	0.42	+0.2
3,328	-		GFF6871	0.42	-1.5
3,328	-		GFF6871	0.42	+0.1
3,328	-		GFF6871	0.42	+1.3
3,378	+		GFF6871	0.47	-0.6
3,378	+		GFF6871	0.47	-0.7
3,378	+		GFF6871	0.47	-0.4
3,378	+		GFF6871	0.47	-0.9
3,378	+		GFF6871	0.47	-0.1
3,379	-		GFF6871	0.47	-0.4
3,379	-		GFF6871	0.47	-1.1
3,379	-		GFF6871	0.47	-0.7
3,379	-		GFF6871	0.47	+0.6
3,379	-		GFF6871	0.47	-0.8
3,379	-		GFF6871	0.47	+0.5
3,379	-		GFF6871	0.47	-0.2
3,379	-		GFF6871	0.47	-1.5
3,387	+		GFF6871	0.48	-0.4
3,387	+		GFF6871	0.48	-0.2
3,387	+		GFF6871	0.48	-0.0
3,388	-		GFF6871	0.48	+0.4
3,388	-		GFF6871	0.48	+0.5
3,388	-		GFF6871	0.48	-0.4
3,388	-		GFF6871	0.48	-0.6
3,450	+		GFF6871	0.54	-0.1
3,451	-		GFF6871	0.54	+0.3
3,564	+		GFF6871	0.66	-0.4
3,564	+		GFF6871	0.66	+1.1
3,564	+		GFF6871	0.66	-0.5
3,564	+		GFF6871	0.66	-0.2
3,564	+		GFF6871	0.66	+1.1
3,564	+		GFF6871	0.66	-0.5
3,564	+		GFF6871	0.66	+0.1
3,564	+		GFF6871	0.66	-1.0
3,564	+		GFF6871	0.66	+0.7
3,565	-		GFF6871	0.66	+0.1
3,565	-		GFF6871	0.66	+0.7
3,565	-		GFF6871	0.66	-0.0
3,565	-		GFF6871	0.66	-0.4
3,567	+		GFF6871	0.66	-0.0
3,567	+		GFF6871	0.66	+0.2
3,568	-		GFF6871	0.67	+0.2
3,568	-		GFF6871	0.67	-1.8
3,568	-		GFF6871	0.67	+0.5
3,568	-		GFF6871	0.67	+1.3
3,609	+		GFF6871	0.71	-0.1
3,610	-		GFF6871	0.71	-0.5
3,610	-		GFF6871	0.71	-0.7
3,610	-		GFF6871	0.71	-0.8
3,610	-		GFF6871	0.71	+0.8
3,610	-		GFF6871	0.71	-1.1
3,613	+		GFF6871	0.71	+0.4
3,670	+		GFF6871	0.77	-0.4
3,670	+		GFF6871	0.77	-0.5
3,671	-		GFF6871	0.77	-0.4
3,671	-		GFF6871	0.77	+2.1
3,671	-		GFF6871	0.77	-0.2
3,671	-		GFF6871	0.77	-0.1
3,720	+		GFF6871	0.82	-0.3
3,720	+		GFF6871	0.82	-0.5
3,721	-		GFF6871	0.82	-1.7
3,729	+		GFF6871	0.83	-0.9
3,729	+		GFF6871	0.83	-0.1
3,729	+		GFF6871	0.83	-0.3
3,729	+		GFF6871	0.83	-0.8
3,729	+		GFF6871	0.83	-1.0
3,729	+		GFF6871	0.83	-0.0
3,729	+		GFF6871	0.83	+1.3
3,729	+		GFF6871	0.83	+0.7
3,729	+		GFF6871	0.83	+0.8
3,730	-		GFF6871	0.83	+1.1
3,730	-		GFF6871	0.83	+0.3
3,730	-		GFF6871	0.83	-1.1
3,730	-		GFF6871	0.83	+0.4
3,730	-		GFF6871	0.83	-1.0
3,730	-		GFF6871	0.83	-0.1
3,768	+		GFF6871	0.87	+0.4
3,769	-		GFF6871	0.87	+0.0
4,005	-		GFF6872	0.16	+0.4
4,005	-		GFF6872	0.16	+0.3
4,005	-		GFF6872	0.16	-1.0
4,071	-		GFF6872	0.26	+0.1
4,071	-		GFF6872	0.26	+0.1
4,071	-		GFF6872	0.26	-0.1
4,100	+		GFF6872	0.30	-0.9
4,100	+		GFF6872	0.30	-0.3
4,100	+		GFF6872	0.30	-0.9
4,100	+		GFF6872	0.30	+1.1
4,100	+		GFF6872	0.30	+0.3
4,100	+		GFF6872	0.30	-0.5
4,100	+		GFF6872	0.30	-1.9
4,100	+		GFF6872	0.30	+0.1
4,100	+		GFF6872	0.30	-1.0
4,100	+		GFF6872	0.30	-0.8
4,100	+		GFF6872	0.30	-0.8
4,100	+		GFF6872	0.30	-0.2
4,100	+		GFF6872	0.30	+0.5
4,100	+		GFF6872	0.30	-0.1
4,100	+		GFF6872	0.30	+0.3
4,101	-		GFF6872	0.30	+0.0
4,101	-		GFF6872	0.30	-0.9
4,101	-		GFF6872	0.30	-1.0
4,101	-		GFF6872	0.30	-0.4
4,101	-		GFF6872	0.30	-0.9
4,101	-		GFF6872	0.30	-1.7
4,101	-		GFF6872	0.30	-0.7
4,101	-		GFF6872	0.30	-0.4
4,101	-		GFF6872	0.30	+0.6
4,105	-		GFF6872	0.30	+0.1
4,105	-		GFF6872	0.30	+0.9
4,211	+		GFF6872	0.46	-0.0
4,211	+		GFF6872	0.46	-0.5
4,211	+		GFF6872	0.46	-0.3
4,211	+		GFF6872	0.46	+1.0
4,211	+		GFF6872	0.46	-0.1
4,212	-		GFF6872	0.46	-0.2
4,212	-		GFF6872	0.46	-1.0
4,244	+		GFF6872	0.50	+0.8
4,244	+		GFF6872	0.50	-0.1
4,245	-		GFF6872	0.51	+0.2
4,245	-		GFF6872	0.51	+0.5
4,245	-		GFF6872	0.51	-0.2
4,310	+		GFF6872	0.60	-0.8
4,490	+		GFF6872	0.86	-0.7
4,491	-		GFF6872	0.86	-0.1
4,491	-		GFF6872	0.86	-0.5
4,491	-		GFF6872	0.86	+0.7
4,505	+		GFF6872	0.88	+0.1
4,506	-		GFF6872	0.88	-1.6
4,544	+				-0.5
4,545	-				+1.7
4,553	+				-0.5
4,553	+				-0.1
4,554	-				+0.5
4,554	-				+1.2
4,554	-				-1.1
4,554	-				+0.4
4,554	-				-0.5
4,554	-				-1.2
4,565	+				-0.9
4,566	-				-0.3
4,566	-				-1.4
4,677	+				-0.8
4,678	-				+0.3
4,758	+		GFF6873	0.13	+0.2
4,758	+		GFF6873	0.13	-0.9
4,758	+		GFF6873	0.13	-0.7
4,758	+		GFF6873	0.13	-1.8
4,758	+		GFF6873	0.13	-0.5
4,758	+		GFF6873	0.13	-1.9
4,759	-		GFF6873	0.13	-1.5
4,759	-		GFF6873	0.13	-0.7
4,759	-		GFF6873	0.13	-1.1
4,759	-		GFF6873	0.13	-0.8
4,759	-		GFF6873	0.13	-1.4
4,759	-		GFF6873	0.13	-0.7
4,785	+		GFF6873	0.15	-0.7
4,786	-		GFF6873	0.15	-0.7
4,791	+		GFF6873	0.16	-0.8
4,792	-		GFF6873	0.16	-2.2
4,792	-		GFF6873	0.16	-0.6
4,830	+		GFF6873	0.19	-0.7
4,830	+		GFF6873	0.19	-0.6
4,830	+		GFF6873	0.19	-0.3
4,831	-		GFF6873	0.19	-0.6
4,831	-		GFF6873	0.19	-1.1
4,881	+		GFF6873	0.24	-0.0
4,881	+		GFF6873	0.24	-1.7
4,887	+		GFF6873	0.24	-1.5
4,887	+		GFF6873	0.24	-0.6
4,887	+		GFF6873	0.24	-0.4
4,887	+		GFF6873	0.24	-1.0
4,887	+		GFF6873	0.24	-0.1
4,887	+		GFF6873	0.24	-0.5
4,887	+		GFF6873	0.24	-0.8
4,887	+		GFF6873	0.24	-0.0
4,887	+		GFF6873	0.24	+0.0
4,887	+		GFF6873	0.24	+0.7
4,887	+		GFF6873	0.24	-0.3
4,887	+		GFF6873	0.24	-1.7
4,887	+		GFF6873	0.24	-1.8
4,888	-		GFF6873	0.24	+0.1
4,888	-		GFF6873	0.24	-1.4
4,888	-		GFF6873	0.24	-0.9
4,888	-		GFF6873	0.24	-1.5
4,888	-		GFF6873	0.24	+1.7
4,888	-		GFF6873	0.24	-2.1
4,888	-		GFF6873	0.24	-0.6
4,888	-		GFF6873	0.24	+0.4
4,888	-		GFF6873	0.24	-0.6
4,888	-		GFF6873	0.24	-0.5
4,888	-		GFF6873	0.24	-0.7
4,888	-		GFF6873	0.24	+0.1