Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6846 and GFF6847 overlap by 4 nucleotides GFF6847 and GFF6848 are separated by 10 nucleotides GFF6848 and GFF6849 are separated by 12 nucleotides
GFF6846 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 28,003 to 29,865
GFF6846
GFF6847 - Ferric siderophore transport system, periplasmic binding protein TonB, at 29,862 to 30,599
GFF6847
GFF6848 - Biopolymer transport protein ExbD/TolR, at 30,610 to 31,023
GFF6848
GFF6849 - MotA/TolQ/ExbB proton channel family protein, at 31,036 to 32,844
GFF6849
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.922 kb on + strand, within GFF6846 at 28.922 kb on + strand, within GFF6846 at 28.923 kb on - strand, within GFF6846 at 28.923 kb on - strand, within GFF6846 at 29.132 kb on + strand, within GFF6846 at 29.291 kb on + strand, within GFF6846 at 29.453 kb on + strand, within GFF6846 at 29.453 kb on + strand, within GFF6846 at 29.453 kb on + strand, within GFF6846 at 29.453 kb on + strand, within GFF6846 at 29.453 kb on + strand, within GFF6846 at 29.453 kb on + strand, within GFF6846 at 29.453 kb on + strand, within GFF6846 at 29.454 kb on - strand, within GFF6846 at 29.454 kb on - strand, within GFF6846 at 29.454 kb on - strand, within GFF6846 at 29.454 kb on - strand, within GFF6846 at 29.454 kb on - strand, within GFF6846 at 29.454 kb on - strand, within GFF6846 at 29.454 kb on - strand, within GFF6846 at 30.118 kb on + strand, within GFF6847 at 30.118 kb on + strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.128 kb on - strand, within GFF6847 at 30.465 kb on + strand, within GFF6847 at 30.465 kb on + strand, within GFF6847 at 30.466 kb on - strand, within GFF6847 at 30.466 kb on - strand, within GFF6847 at 30.692 kb on + strand, within GFF6848 at 30.693 kb on - strand, within GFF6848 at 31.169 kb on + strand at 31.170 kb on - strand at 31.212 kb on + strand at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.329 kb on - strand, within GFF6849 at 31.329 kb on - strand, within GFF6849 at 31.449 kb on - strand, within GFF6849 at 31.460 kb on + strand, within GFF6849 at 31.460 kb on + strand, within GFF6849 at 31.460 kb on + strand, within GFF6849 at 31.505 kb on + strand, within GFF6849 at 31.505 kb on + strand, within GFF6849 at 31.505 kb on + strand, within GFF6849 at 31.506 kb on - strand, within GFF6849
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 28,922 + GFF6846 0.49 +1.1 28,922 + GFF6846 0.49 -0.3 28,923 - GFF6846 0.49 -0.6 28,923 - GFF6846 0.49 -0.7 29,132 + GFF6846 0.61 +0.7 29,291 + GFF6846 0.69 +0.6 29,453 + GFF6846 0.78 -0.1 29,453 + GFF6846 0.78 -0.9 29,453 + GFF6846 0.78 +0.6 29,453 + GFF6846 0.78 -1.3 29,453 + GFF6846 0.78 +1.2 29,453 + GFF6846 0.78 -0.2 29,453 + GFF6846 0.78 +0.2 29,454 - GFF6846 0.78 +0.8 29,454 - GFF6846 0.78 +0.3 29,454 - GFF6846 0.78 -0.9 29,454 - GFF6846 0.78 +0.3 29,454 - GFF6846 0.78 -0.8 29,454 - GFF6846 0.78 +1.4 29,454 - GFF6846 0.78 -0.1 30,118 + GFF6847 0.35 -0.1 30,118 + GFF6847 0.35 -0.0 30,119 - GFF6847 0.35 -0.5 30,119 - GFF6847 0.35 -0.6 30,119 - GFF6847 0.35 -0.1 30,119 - GFF6847 0.35 +0.3 30,119 - GFF6847 0.35 +0.1 30,119 - GFF6847 0.35 +0.1 30,128 - GFF6847 0.36 -1.2 30,465 + GFF6847 0.82 +0.0 30,465 + GFF6847 0.82 +0.4 30,466 - GFF6847 0.82 -1.1 30,466 - GFF6847 0.82 -0.0 30,692 + GFF6848 0.20 -0.2 30,693 - GFF6848 0.20 -0.4 31,169 + -0.0 31,170 - -2.0 31,212 + -0.1 31,328 + GFF6849 0.16 -0.3 31,328 + GFF6849 0.16 +0.7 31,328 + GFF6849 0.16 -0.5 31,328 + GFF6849 0.16 -0.6 31,328 + GFF6849 0.16 -0.1 31,328 + GFF6849 0.16 +2.2 31,329 - GFF6849 0.16 -0.5 31,329 - GFF6849 0.16 -1.1 31,449 - GFF6849 0.23 -0.4 31,460 + GFF6849 0.23 -1.1 31,460 + GFF6849 0.23 -0.6 31,460 + GFF6849 0.23 +0.1 31,505 + GFF6849 0.26 -0.5 31,505 + GFF6849 0.26 -1.5 31,505 + GFF6849 0.26 -0.1 31,506 - GFF6849 0.26 -0.3
Or see this region's nucleotide sequence