Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6840 and GFF6841 are separated by 74 nucleotides GFF6841 and GFF6842 are separated by 18 nucleotides GFF6842 and GFF6843 are separated by 8 nucleotides GFF6843 and GFF6844 are separated by 29 nucleotides GFF6844 and GFF6845 overlap by 4 nucleotides
GFF6840 - Putative transmembrane protein, at 24,244 to 24,915
GFF6840
GFF6841 - hypothetical protein, at 24,990 to 25,487
GFF6841
GFF6842 - no description, at 25,506 to 25,760
GFF6842
GFF6843 - FIG00958542: hypothetical protein, at 25,769 to 26,329
GFF6843
GFF6844 - Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system, at 26,359 to 27,273
GFF6844
GFF6845 - ATPase involved in DNA repair, at 27,270 to 27,992
GFF6845
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.010 kb on - strand at 25.010 kb on - strand at 25.041 kb on + strand, within GFF6841 at 25.041 kb on + strand, within GFF6841 at 25.042 kb on - strand, within GFF6841 at 25.149 kb on + strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.464 kb on + strand at 25.869 kb on + strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.935 kb on + strand, within GFF6843 at 25.935 kb on + strand, within GFF6843 at 25.936 kb on - strand, within GFF6843 at 25.936 kb on - strand, within GFF6843 at 26.103 kb on + strand, within GFF6843 at 26.103 kb on + strand, within GFF6843 at 26.104 kb on - strand, within GFF6843 at 26.104 kb on - strand, within GFF6843 at 26.438 kb on + strand at 26.439 kb on - strand at 26.807 kb on + strand, within GFF6844 at 26.807 kb on + strand, within GFF6844 at 26.808 kb on - strand, within GFF6844 at 26.808 kb on - strand, within GFF6844 at 26.808 kb on - strand, within GFF6844 at 26.808 kb on - strand, within GFF6844 at 26.808 kb on - strand, within GFF6844 at 26.841 kb on + strand, within GFF6844 at 26.843 kb on + strand, within GFF6844 at 26.843 kb on + strand, within GFF6844 at 26.843 kb on + strand, within GFF6844 at 26.843 kb on + strand, within GFF6844 at 26.844 kb on - strand, within GFF6844 at 26.925 kb on + strand, within GFF6844 at 26.926 kb on - strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.927 kb on + strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844 at 26.928 kb on - strand, within GFF6844
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 25,009 + +0.1 25,009 + -0.8 25,009 + +0.4 25,009 + +0.2 25,009 + -0.0 25,009 + -0.6 25,009 + +0.1 25,009 + -0.6 25,009 + -1.2 25,010 - -0.9 25,010 - -0.6 25,041 + GFF6841 0.10 -1.6 25,041 + GFF6841 0.10 -1.0 25,042 - GFF6841 0.10 -1.7 25,149 + GFF6841 0.32 -0.6 25,150 - GFF6841 0.32 -1.1 25,150 - GFF6841 0.32 -0.0 25,150 - GFF6841 0.32 +0.7 25,150 - GFF6841 0.32 +0.4 25,150 - GFF6841 0.32 +0.9 25,150 - GFF6841 0.32 +0.4 25,464 + -0.0 25,869 + GFF6843 0.18 -1.4 25,870 - GFF6843 0.18 -0.3 25,870 - GFF6843 0.18 -0.2 25,870 - GFF6843 0.18 -0.1 25,870 - GFF6843 0.18 -0.7 25,870 - GFF6843 0.18 -1.5 25,935 + GFF6843 0.30 -0.1 25,935 + GFF6843 0.30 -0.1 25,936 - GFF6843 0.30 -0.7 25,936 - GFF6843 0.30 -0.3 26,103 + GFF6843 0.60 -0.4 26,103 + GFF6843 0.60 +0.3 26,104 - GFF6843 0.60 -0.7 26,104 - GFF6843 0.60 -1.6 26,438 + +0.3 26,439 - -0.1 26,807 + GFF6844 0.49 +0.0 26,807 + GFF6844 0.49 -0.7 26,808 - GFF6844 0.49 +0.1 26,808 - GFF6844 0.49 -0.4 26,808 - GFF6844 0.49 -0.3 26,808 - GFF6844 0.49 -0.4 26,808 - GFF6844 0.49 -1.2 26,841 + GFF6844 0.53 +0.4 26,843 + GFF6844 0.53 -0.7 26,843 + GFF6844 0.53 +0.2 26,843 + GFF6844 0.53 -1.0 26,843 + GFF6844 0.53 +0.4 26,844 - GFF6844 0.53 +0.1 26,925 + GFF6844 0.62 +1.0 26,926 - GFF6844 0.62 -0.1 26,927 + GFF6844 0.62 -0.6 26,927 + GFF6844 0.62 +0.2 26,927 + GFF6844 0.62 -0.3 26,927 + GFF6844 0.62 -0.4 26,927 + GFF6844 0.62 +0.1 26,927 + GFF6844 0.62 -0.7 26,927 + GFF6844 0.62 +2.2 26,927 + GFF6844 0.62 -1.2 26,927 + GFF6844 0.62 -0.3 26,928 - GFF6844 0.62 +0.1 26,928 - GFF6844 0.62 -0.7 26,928 - GFF6844 0.62 -0.6 26,928 - GFF6844 0.62 -0.8 26,928 - GFF6844 0.62 +0.8 26,928 - GFF6844 0.62 -1.9 26,928 - GFF6844 0.62 +0.2 26,928 - GFF6844 0.62 +0.9 26,928 - GFF6844 0.62 -0.1 26,928 - GFF6844 0.62 -0.1 26,928 - GFF6844 0.62 -0.0
Or see this region's nucleotide sequence