Strain Fitness in Variovorax sp. SCN45 around GFF6755

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
1,740	+		GFF6753	0.80	-0.4
1,740	+		GFF6753	0.80	+0.7
1,741	-		GFF6753	0.80	+1.3
1,741	-		GFF6753	0.80	-1.8
1,851	+		GFF6753	0.85	-0.1
1,851	+		GFF6753	0.85	+0.3
1,851	+		GFF6753	0.85	+0.5
1,851	+		GFF6753	0.85	-0.3
1,852	-		GFF6753	0.85	+0.5
1,852	-		GFF6753	0.85	+0.1
1,852	-		GFF6753	0.85	-0.2
1,852	-		GFF6753	0.85	+0.2
1,931	+		GFF6753	0.89	-0.9
1,931	+		GFF6753	0.89	+0.3
1,932	-		GFF6753	0.89	-0.5
1,932	-		GFF6753	0.89	-0.1
1,974	-				+1.2
1,974	-				-0.1
1,974	-				+1.1
2,001	+				-2.0
2,002	-				-2.3
2,002	-				-0.4
2,002	-				+0.8
2,109	+				-0.3
2,109	+				-1.4
2,109	+				-0.7
2,109	+				-0.6
2,109	+				-1.2
2,109	+				-0.1
2,109	+				-0.1
2,110	-				-0.8
2,110	-				-0.6
2,110	-				-0.4
2,110	-				-0.2
2,110	-				-0.3
2,110	-				+0.6
2,255	+		GFF6754	0.23	+1.1
2,255	+		GFF6754	0.23	+0.8
2,255	+		GFF6754	0.23	-0.8
2,255	+		GFF6754	0.23	+0.3
2,255	+		GFF6754	0.23	+0.5
2,255	+		GFF6754	0.23	-0.3
2,256	-		GFF6754	0.24	-0.0
2,256	-		GFF6754	0.24	+1.0
2,256	-		GFF6754	0.24	-0.7
2,256	-		GFF6754	0.24	+0.4
2,578	+		GFF6754	0.86	-0.9
2,745	+				-0.6
2,745	+				+1.0
2,745	+				-1.5
2,745	+				-1.8
2,745	+				+1.9
2,746	-				-0.3
2,817	+		GFF6755	0.14	+1.8
2,817	+		GFF6755	0.14	+0.5
2,817	+		GFF6755	0.14	-0.6
2,818	-		GFF6755	0.14	+1.3
2,818	-		GFF6755	0.14	-0.2
2,890	+		GFF6755	0.20	+0.4
2,890	+		GFF6755	0.20	-0.9
2,890	+		GFF6755	0.20	+0.2
2,891	-		GFF6755	0.20	+0.2
2,909	+		GFF6755	0.22	+0.1
2,909	+		GFF6755	0.22	-0.7
2,926	+		GFF6755	0.23	-0.1
2,927	-		GFF6755	0.23	-0.7
2,998	+		GFF6755	0.29	-1.3
2,998	+		GFF6755	0.29	-0.4
2,998	+		GFF6755	0.29	+0.0
2,998	+		GFF6755	0.29	-0.5
3,057	-		GFF6755	0.34	-0.2
3,057	-		GFF6755	0.34	+0.9
3,057	-		GFF6755	0.34	-0.3
3,058	+		GFF6755	0.34	-0.1
3,058	+		GFF6755	0.34	-0.7
3,058	+		GFF6755	0.34	+0.4
3,058	+		GFF6755	0.34	+0.6
3,058	+		GFF6755	0.34	-1.1
3,058	+		GFF6755	0.34	-0.3
3,058	+		GFF6755	0.34	-1.1
3,058	+		GFF6755	0.34	+0.3
3,058	+		GFF6755	0.34	-0.5
3,058	+		GFF6755	0.34	-1.2
3,058	+		GFF6755	0.34	-0.6
3,059	-		GFF6755	0.34	+0.5
3,059	-		GFF6755	0.34	-0.5
3,059	-		GFF6755	0.34	+0.7
3,059	-		GFF6755	0.34	-0.4
3,059	-		GFF6755	0.34	-0.9
3,059	-		GFF6755	0.34	-0.1
3,059	-		GFF6755	0.34	-0.2
3,059	-		GFF6755	0.34	+0.2
3,059	-		GFF6755	0.34	+0.3
3,059	-		GFF6755	0.34	-0.7
3,059	-		GFF6755	0.34	-0.5
3,059	-		GFF6755	0.34	+0.1
3,059	-		GFF6755	0.34	-0.6
3,059	-		GFF6755	0.34	+0.1
3,059	-		GFF6755	0.34	+0.7
3,071	+		GFF6755	0.35	-0.1
3,085	-		GFF6755	0.36	-0.6
3,295	+		GFF6755	0.53	+0.7
3,295	+		GFF6755	0.53	-0.3
3,295	+		GFF6755	0.53	-0.5
3,295	+		GFF6755	0.53	-0.8
3,295	+		GFF6755	0.53	+0.1
3,295	+		GFF6755	0.53	+0.7
3,295	+		GFF6755	0.53	-0.4
3,296	-		GFF6755	0.53	-1.3
3,296	-		GFF6755	0.53	+0.8
3,321	+		GFF6755	0.56	+1.9
3,322	-		GFF6755	0.56	-0.3
3,322	-		GFF6755	0.56	-0.7
3,322	-		GFF6755	0.56	+0.8
3,355	+		GFF6755	0.58	-0.3
3,355	+		GFF6755	0.58	-0.6
3,356	-		GFF6755	0.58	+0.7
3,356	-		GFF6755	0.58	+0.5
3,356	-		GFF6755	0.58	+0.3
3,356	-		GFF6755	0.58	-0.3
3,393	+		GFF6755	0.61	+0.5
3,394	-		GFF6755	0.62	-0.4
3,394	-		GFF6755	0.62	-0.4
3,403	+		GFF6755	0.62	+0.1
3,403	+		GFF6755	0.62	-2.4
3,404	-		GFF6755	0.62	+0.9
3,404	-		GFF6755	0.62	+1.2
3,404	-		GFF6755	0.62	-1.5
3,404	-		GFF6755	0.62	-0.2
3,612	+		GFF6755	0.80	-0.3
3,612	+		GFF6755	0.80	-0.1
3,612	+		GFF6755	0.80	-0.5
3,612	+		GFF6755	0.80	-0.4
3,612	+		GFF6755	0.80	-0.2
3,613	-		GFF6755	0.80	+0.2
3,802	+				-0.7
3,802	+				-0.7
3,803	-				+0.7
3,808	+				-0.6
3,808	+				+0.2
3,808	+				-0.4
3,809	-				+0.8
3,860	+				-1.7
3,860	+				-0.7
3,860	+				-0.3
3,861	-				-0.3
3,861	-				-2.1
3,861	-				+1.9
3,863	+				-1.7
3,863	+				-0.6
3,863	+				+1.2
3,864	-				-1.1
3,864	-				-0.3
3,864	-				-0.5
3,864	-				+0.8
3,864	-				-0.8
3,864	-				-0.0
3,885	-				-0.0
3,885	-				-0.9
3,885	-				+0.0
3,942	+		GFF6756	0.21	-0.3
3,942	+		GFF6756	0.21	-0.2
3,942	+		GFF6756	0.21	-0.7
3,943	-		GFF6756	0.22	-0.5
3,943	-		GFF6756	0.22	+0.0
3,943	-		GFF6756	0.22	-0.8
3,943	-		GFF6756	0.22	-1.5
3,943	-		GFF6756	0.22	-0.1
3,943	-		GFF6756	0.22	-0.7
3,943	-		GFF6756	0.22	-0.3
3,943	-		GFF6756	0.22	-0.6
3,943	-		GFF6756	0.22	-0.1
3,943	-		GFF6756	0.22	+0.5
3,968	+		GFF6756	0.30	-0.3
3,968	+		GFF6756	0.30	-0.0
3,968	+		GFF6756	0.30	+1.5
3,968	+		GFF6756	0.30	-0.7
3,968	+		GFF6756	0.30	-0.3
3,968	+		GFF6756	0.30	-0.6
3,968	+		GFF6756	0.30	-0.9
3,969	-		GFF6756	0.31	-0.1
3,969	-		GFF6756	0.31	-0.7
3,969	-		GFF6756	0.31	+0.7
3,969	-		GFF6756	0.31	-0.4
3,969	-		GFF6756	0.31	-0.1
3,969	-		GFF6756	0.31	+0.2
3,969	-		GFF6756	0.31	-0.7
4,034	+		GFF6756	0.54	-0.3
4,034	+		GFF6756	0.54	-1.5
4,035	-		GFF6756	0.54	+0.5
4,229	+				-0.9
4,230	-				-0.2
4,247	+				-0.2
4,248	-				+0.4
4,248	-				+0.6
4,248	-				-0.5
4,248	-				-0.6
4,265	+		GFF6757	0.13	-0.5
4,265	+		GFF6757	0.13	-1.6
4,265	+		GFF6757	0.13	-0.5
4,265	+		GFF6757	0.13	+0.6
4,265	+		GFF6757	0.13	+0.4
4,265	+		GFF6757	0.13	+0.3
4,266	-		GFF6757	0.13	+3.5
4,266	-		GFF6757	0.13	-1.5
4,266	-		GFF6757	0.13	-0.1
4,266	-		GFF6757	0.13	+0.0
4,268	+		GFF6757	0.14	-1.1
4,268	+		GFF6757	0.14	-1.3
4,268	+		GFF6757	0.14	-1.0
4,268	+		GFF6757	0.14	+0.6
4,268	+		GFF6757	0.14	-0.8
4,268	+		GFF6757	0.14	-0.1
4,268	+		GFF6757	0.14	+0.3
4,268	+		GFF6757	0.14	-0.5
4,268	+		GFF6757	0.14	+0.8
4,268	+		GFF6757	0.14	-0.2
4,269	-		GFF6757	0.14	-0.1
4,269	-		GFF6757	0.14	-0.0
4,269	-		GFF6757	0.14	-0.6
4,269	-		GFF6757	0.14	-0.1
4,269	-		GFF6757	0.14	-1.8
4,269	-		GFF6757	0.14	+0.5
4,269	-		GFF6757	0.14	-0.5
4,269	-		GFF6757	0.14	-0.7
4,269	-		GFF6757	0.14	-0.7
4,269	-		GFF6757	0.14	+1.3
4,269	-		GFF6757	0.14	+0.9
4,293	-		GFF6757	0.22	+0.5
4,311	-		GFF6757	0.29	-1.1
4,337	+		GFF6757	0.37	+0.3
4,337	+		GFF6757	0.37	+0.7
4,338	-		GFF6757	0.38	-0.1
4,338	-		GFF6757	0.38	-0.0
4,338	-		GFF6757	0.38	-1.0
4,338	-		GFF6757	0.38	-1.0
4,345	+		GFF6757	0.40	-1.5
4,345	+		GFF6757	0.40	-0.6
4,345	+		GFF6757	0.40	+1.5
4,345	+		GFF6757	0.40	-0.4
4,346	-		GFF6757	0.41	-0.5
4,346	-		GFF6757	0.41	+0.8
4,346	-		GFF6757	0.41	+0.0
4,346	-		GFF6757	0.41	-0.8
4,346	-		GFF6757	0.41	-0.1
4,346	-		GFF6757	0.41	-0.1
4,425	+		GFF6757	0.68	+0.4
4,425	+		GFF6757	0.68	+1.1
4,425	+		GFF6757	0.68	-0.9
4,426	-		GFF6757	0.68	-0.1
4,447	+		GFF6757	0.75	-0.2
4,448	-		GFF6757	0.76	-0.5
4,452	+		GFF6757	0.77	-0.3
4,452	+		GFF6757	0.77	-0.3
4,452	+		GFF6757	0.77	-0.3
4,452	+		GFF6757	0.77	+0.8
4,452	+		GFF6757	0.77	-0.3
4,452	+		GFF6757	0.77	+0.1
4,453	-		GFF6757	0.77	-1.1
4,453	-		GFF6757	0.77	+0.6
4,453	-		GFF6757	0.77	+0.7
4,453	-		GFF6757	0.77	-0.4
4,453	-		GFF6757	0.77	-0.4
4,453	-		GFF6757	0.77	+0.5
4,453	-		GFF6757	0.77	+0.2
4,453	-		GFF6757	0.77	-0.8
4,454	+		GFF6757	0.78	+0.5
4,454	+		GFF6757	0.78	-0.8
4,454	+		GFF6757	0.78	+0.4
4,454	+		GFF6757	0.78	-0.4
4,454	+		GFF6757	0.78	-0.3
4,454	+		GFF6757	0.78	-2.7
4,454	+		GFF6757	0.78	-1.4
4,454	+		GFF6757	0.78	-0.1
4,454	+		GFF6757	0.78	+0.0
4,455	-		GFF6757	0.78	-0.8
4,455	-		GFF6757	0.78	+2.1
4,455	-		GFF6757	0.78	-1.7
4,455	-		GFF6757	0.78	+0.3
4,455	-		GFF6757	0.78	+0.7
4,455	-		GFF6757	0.78	+0.5
4,455	-		GFF6757	0.78	-0.3
4,455	-		GFF6757	0.78	-0.0
4,484	+		GFF6757	0.88	-0.3
4,485	-		GFF6757	0.88	-1.0
4,485	-		GFF6757	0.88	+0.8
4,485	-		GFF6757	0.88	-0.7
4,511	+				-0.0
4,511	+				-0.0
4,511	+				+0.0
4,511	+				-0.7
4,511	+				-0.4
4,511	+				-0.8
4,511	+				-0.3
4,512	-				+0.2
4,512	-				+0.9
4,519	+				+1.2
4,519	+				-0.8
4,519	+				-0.4
4,519	+				-0.5
4,519	+				+0.4
4,519	+				+0.1
4,519	+				-0.9
4,519	+				-0.2
4,519	+				-0.3
4,519	+				-0.5
4,519	+				+0.3
4,519	+				-0.8
4,519	+				+0.0
4,519	+				+0.5
4,519	+				-0.2
4,519	+				+0.2
4,519	+				+2.9
4,519	+				-0.6
4,519	+				-1.3
4,519	+				-0.4
4,519	+				-0.1
4,520	-				-0.3
4,520	-				-0.7
4,520	-				-0.1
4,520	-				+0.4
4,520	-				-0.5
4,520	-				+0.7
4,520	-				+0.3
4,520	-				+1.5
4,520	-				+1.9
4,520	-				-0.3
4,520	-				-1.0
4,520	-				+0.0
4,520	-				-0.9
4,520	-				-2.4
4,520	-				-0.2
4,520	-				+1.9
4,520	-				-0.5
4,520	-				-0.2
4,520	-				+0.2
4,520	-				-0.2
4,520	-				+0.1
4,520	-				-0.2
4,532	-				-1.3
4,541	+				-0.3
4,541	+				+1.1
4,541	+				-0.5
4,541	+				-0.1
4,541	+				-0.4
4,541	+				-0.2
4,541	+				+0.4
4,541	+				+0.1
4,541	+				-0.1
4,542	-				-0.5
4,542	-				-0.4
4,542	-				+0.2
4,542	-				-0.1
4,542	-				+0.3
4,542	-				-0.2
4,542	-				-1.0
4,542	-				+1.5
4,542	-				+1.1
4,542	-				+0.5
4,542	-				-0.3
4,552	+				-0.2
4,560	-				-0.2
4,571	+				+0.1
4,572	-				+0.5
4,572	-				+0.1
4,709	+				+0.2
4,709	+				+0.1
4,710	-				-0.9
4,710	-				-0.8
4,710	-				+0.1
4,713	+				+0.2
4,713	+				-0.1
4,713	+				-0.1
4,713	+				-0.4
4,713	+				+0.3
4,713	+				+0.2
4,714	-				+0.0