Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6703 and GFF6704 are separated by 4 nucleotides GFF6704 and GFF6705 are separated by 343 nucleotides GFF6705 and GFF6706 are separated by 81 nucleotides GFF6706 and GFF6707 are separated by 0 nucleotides
GFF6703 - Lipoprotein-releasing system ATP-binding protein LolD, at 12,254 to 12,931
GFF6703
GFF6704 - no description, at 12,936 to 13,151
GFF6704
GFF6705 - hypothetical protein, at 13,495 to 14,268
GFF6705
GFF6706 - ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92), at 14,350 to 14,976
GFF6706
GFF6707 - RidA/YER057c/UK114 superfamily protein, at 14,977 to 15,366
GFF6707
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.022 kb on + strand, within GFF6704 at 13.023 kb on - strand, within GFF6704 at 13.023 kb on - strand, within GFF6704 at 13.120 kb on + strand, within GFF6704 at 13.120 kb on + strand, within GFF6704 at 13.276 kb on + strand at 13.276 kb on + strand at 13.276 kb on + strand at 13.276 kb on + strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.520 kb on + strand at 13.520 kb on + strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.728 kb on - strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 14.050 kb on - strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.252 kb on + strand at 14.252 kb on + strand at 14.253 kb on - strand at 14.253 kb on - strand at 14.253 kb on - strand at 14.285 kb on - strand at 14.430 kb on + strand, within GFF6706 at 14.431 kb on + strand, within GFF6706 at 14.432 kb on - strand, within GFF6706 at 14.432 kb on - strand, within GFF6706 at 14.859 kb on + strand, within GFF6706 at 14.860 kb on - strand, within GFF6706 at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.994 kb on - strand at 14.994 kb on - strand at 14.994 kb on - strand at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,022 + GFF6704 0.40 +0.3 13,023 - GFF6704 0.40 +1.2 13,023 - GFF6704 0.40 -1.8 13,120 + GFF6704 0.85 -0.8 13,120 + GFF6704 0.85 +0.1 13,276 + -0.1 13,276 + +0.6 13,276 + +0.4 13,276 + -0.1 13,277 - -0.4 13,277 - -0.4 13,277 - -0.7 13,277 - -0.9 13,277 - +0.4 13,277 - -0.4 13,520 + +0.1 13,520 + -0.4 13,521 - -0.8 13,521 - +0.2 13,521 - +0.8 13,521 - -0.5 13,693 + GFF6705 0.26 -1.1 13,693 + GFF6705 0.26 -0.4 13,693 + GFF6705 0.26 +1.0 13,693 + GFF6705 0.26 -0.8 13,693 + GFF6705 0.26 -0.9 13,694 - GFF6705 0.26 -0.3 13,694 - GFF6705 0.26 -0.4 13,728 - GFF6705 0.30 -1.3 13,874 + GFF6705 0.49 +0.2 13,874 + GFF6705 0.49 +1.2 13,874 + GFF6705 0.49 -1.0 13,943 - GFF6705 0.58 -0.2 13,943 - GFF6705 0.58 -0.3 14,050 - GFF6705 0.72 -1.6 14,153 + GFF6705 0.85 -1.7 14,153 + GFF6705 0.85 -0.3 14,153 + GFF6705 0.85 -0.4 14,153 + GFF6705 0.85 +0.6 14,153 + GFF6705 0.85 -0.4 14,153 + GFF6705 0.85 -0.3 14,153 + GFF6705 0.85 -0.0 14,153 + GFF6705 0.85 +1.4 14,154 - GFF6705 0.85 -1.4 14,154 - GFF6705 0.85 -0.4 14,154 - GFF6705 0.85 +0.3 14,154 - GFF6705 0.85 +1.0 14,154 - GFF6705 0.85 -1.3 14,154 - GFF6705 0.85 -1.3 14,154 - GFF6705 0.85 -0.5 14,154 - GFF6705 0.85 +0.3 14,154 - GFF6705 0.85 -1.1 14,154 - GFF6705 0.85 -0.3 14,252 + +0.1 14,252 + +0.1 14,253 - -0.9 14,253 - +1.2 14,253 - -0.0 14,285 - +0.8 14,430 + GFF6706 0.13 -0.0 14,431 + GFF6706 0.13 -0.5 14,432 - GFF6706 0.13 -0.5 14,432 - GFF6706 0.13 +0.1 14,859 + GFF6706 0.81 -0.7 14,860 - GFF6706 0.81 -0.4 14,993 + -0.4 14,993 + -0.8 14,993 + +0.1 14,993 + -1.2 14,994 - +0.1 14,994 - -0.7 14,994 - -0.9 15,077 + GFF6707 0.26 -1.4 15,077 + GFF6707 0.26 +0.1 15,077 + GFF6707 0.26 -0.9 15,078 - GFF6707 0.26 -0.6 15,078 - GFF6707 0.26 -0.4 15,078 - GFF6707 0.26 -0.9 15,078 - GFF6707 0.26 +0.8 15,086 + GFF6707 0.28 -2.1 15,086 + GFF6707 0.28 +1.2 15,086 + GFF6707 0.28 -1.3 15,086 + GFF6707 0.28 -0.6 15,086 + GFF6707 0.28 -2.4 15,086 + GFF6707 0.28 -0.3 15,086 + GFF6707 0.28 -0.8 15,086 + GFF6707 0.28 +0.6 15,086 + GFF6707 0.28 +0.3 15,087 - GFF6707 0.28 -0.0 15,087 - GFF6707 0.28 -0.9 15,087 - GFF6707 0.28 +0.9 15,087 - GFF6707 0.28 +0.2 15,087 - GFF6707 0.28 -1.5 15,087 - GFF6707 0.28 -0.7 15,087 - GFF6707 0.28 -0.2 15,087 - GFF6707 0.28 -0.2 15,087 - GFF6707 0.28 +0.5 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 -0.5 15,087 - GFF6707 0.28 -0.6 15,087 - GFF6707 0.28 -1.1 15,087 - GFF6707 0.28 -1.1 15,087 - GFF6707 0.28 -0.0
Or see this region's nucleotide sequence