Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6596 and GFF6597 are separated by 1 nucleotides GFF6597 and GFF6598 are separated by 717 nucleotides
GFF6596 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 40,060 to 41,175
GFF6596
GFF6597 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 41,177 to 42,478
GFF6597
GFF6598 - Putative formate dehydrogenase oxidoreductase protein, at 43,196 to 45,472
GFF6598
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1 at 40.371 kb on + strand, within GFF6596 at 40.469 kb on + strand, within GFF6596 at 40.510 kb on + strand, within GFF6596 at 40.581 kb on - strand, within GFF6596 at 40.641 kb on - strand, within GFF6596 at 40.646 kb on + strand, within GFF6596 at 40.932 kb on - strand, within GFF6596 at 40.960 kb on + strand, within GFF6596 at 41.333 kb on + strand, within GFF6597 at 41.333 kb on + strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 42.007 kb on - strand, within GFF6597 at 42.222 kb on - strand, within GFF6597 at 42.248 kb on + strand, within GFF6597 at 42.468 kb on + strand at 42.468 kb on + strand at 42.555 kb on + strand at 42.555 kb on + strand at 42.606 kb on + strand at 42.723 kb on - strand at 42.743 kb on + strand at 42.743 kb on + strand at 42.744 kb on - strand at 42.755 kb on + strand at 42.755 kb on + strand at 42.836 kb on - strand at 42.856 kb on + strand at 43.027 kb on + strand at 43.027 kb on + strand at 43.044 kb on - strand at 43.097 kb on - strand at 43.122 kb on - strand at 43.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 40,371 + GFF6596 0.28 -0.9 40,469 + GFF6596 0.37 -0.2 40,510 + GFF6596 0.40 -0.3 40,581 - GFF6596 0.47 -0.3 40,641 - GFF6596 0.52 +0.0 40,646 + GFF6596 0.53 -0.2 40,932 - GFF6596 0.78 +0.1 40,960 + GFF6596 0.81 -1.3 41,333 + GFF6597 0.12 -0.8 41,333 + GFF6597 0.12 -1.4 41,903 - GFF6597 0.56 -0.5 41,903 - GFF6597 0.56 -0.5 42,007 - GFF6597 0.64 +0.8 42,222 - GFF6597 0.80 +0.1 42,248 + GFF6597 0.82 -1.0 42,468 + +0.7 42,468 + +1.0 42,555 + -0.6 42,555 + -0.5 42,606 + +0.6 42,723 - -0.3 42,743 + -0.3 42,743 + +0.4 42,744 - -1.2 42,755 + +0.1 42,755 + +0.0 42,836 - -1.3 42,856 + -0.6 43,027 + -0.2 43,027 + +0.3 43,044 - -0.5 43,097 - -0.1 43,122 - +1.3 43,233 - -0.0
Or see this region's nucleotide sequence