Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6375 and GFF6376 overlap by 4 nucleotides GFF6376 and GFF6377 overlap by 23 nucleotides GFF6377 and GFF6378 are separated by 52 nucleotides GFF6378 and GFF6379 are separated by 161 nucleotides
GFF6375 - Uncharacterized aldehyde oxidase, molybdopterin-binding subunit, at 44,874 to 48,632
GFF6375
GFF6376 - Uncharacterized aldehyde oxidase, 2Fe-2S subunit, at 48,629 to 49,129
GFF6376
GFF6377 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 49,107 to 50,267
GFF6377
GFF6378 - Nicotinamidase (EC 3.5.1.19), at 50,320 to 51,045
GFF6378
GFF6379 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 51,207 to 51,941
GFF6379
Position (kb) 49
50
51 Strain fitness (log2 ratio) -2
-1
0
1 at 48.133 kb on + strand, within GFF6375 at 48.133 kb on + strand, within GFF6375 at 48.134 kb on - strand, within GFF6375 at 49.136 kb on - strand at 49.136 kb on - strand at 49.136 kb on - strand at 49.136 kb on - strand at 49.136 kb on - strand at 49.184 kb on - strand at 49.306 kb on + strand, within GFF6377 at 49.306 kb on + strand, within GFF6377 at 49.307 kb on - strand, within GFF6377 at 49.307 kb on - strand, within GFF6377 at 49.325 kb on - strand, within GFF6377 at 49.366 kb on + strand, within GFF6377 at 49.366 kb on + strand, within GFF6377 at 49.496 kb on - strand, within GFF6377 at 49.496 kb on - strand, within GFF6377 at 49.545 kb on + strand, within GFF6377 at 49.546 kb on - strand, within GFF6377 at 49.669 kb on + strand, within GFF6377 at 49.670 kb on - strand, within GFF6377 at 49.729 kb on + strand, within GFF6377 at 50.006 kb on - strand, within GFF6377 at 50.077 kb on + strand, within GFF6377 at 50.078 kb on - strand, within GFF6377 at 50.290 kb on + strand at 50.290 kb on + strand at 50.291 kb on - strand at 50.595 kb on - strand, within GFF6378 at 50.724 kb on - strand, within GFF6378 at 51.060 kb on + strand at 51.208 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 48,133 + GFF6375 0.87 +0.2 48,133 + GFF6375 0.87 +0.2 48,134 - GFF6375 0.87 -0.4 49,136 - -1.0 49,136 - +0.0 49,136 - +0.1 49,136 - -1.5 49,136 - +0.4 49,184 - -2.0 49,306 + GFF6377 0.17 +0.5 49,306 + GFF6377 0.17 -1.3 49,307 - GFF6377 0.17 -1.2 49,307 - GFF6377 0.17 +0.5 49,325 - GFF6377 0.19 -1.2 49,366 + GFF6377 0.22 -1.0 49,366 + GFF6377 0.22 -0.1 49,496 - GFF6377 0.34 -0.3 49,496 - GFF6377 0.34 -0.5 49,545 + GFF6377 0.38 +0.1 49,546 - GFF6377 0.38 +0.3 49,669 + GFF6377 0.48 -1.1 49,670 - GFF6377 0.48 +0.1 49,729 + GFF6377 0.54 -0.1 50,006 - GFF6377 0.77 -1.3 50,077 + GFF6377 0.84 -0.0 50,078 - GFF6377 0.84 -0.8 50,290 + -1.3 50,290 + -1.3 50,291 - +0.9 50,595 - GFF6378 0.38 -0.5 50,724 - GFF6378 0.56 -0.6 51,060 + -0.6 51,208 + -0.0
Or see this region's nucleotide sequence