Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6270 and GFF6272 are separated by 51 nucleotides GFF6272 and GFF6271 overlap by 2 nucleotides GFF6271 and GFF6273 are separated by 50 nucleotides
GFF6270 - Uncharacterized MFS-type transporter, at 62,195 to 63,646
GFF6270
GFF6272 - no description, at 63,698 to 63,832
GFF6272
GFF6271 - Phosphatidylglycerophosphatase A (EC 3.1.3.27), at 63,831 to 64,358
GFF6271
GFF6273 - Nicotinamide-nucleotide amidase (EC 3.5.1.42), at 64,409 to 64,918
GFF6273
Position (kb) 63
64 Strain fitness (log2 ratio) -1
0
1 at 62.736 kb on + strand, within GFF6270 at 62.737 kb on - strand, within GFF6270 at 62.820 kb on + strand, within GFF6270 at 62.820 kb on + strand, within GFF6270 at 62.821 kb on - strand, within GFF6270 at 62.821 kb on - strand, within GFF6270 at 62.821 kb on - strand, within GFF6270 at 63.240 kb on + strand, within GFF6270 at 63.241 kb on - strand, within GFF6270 at 63.241 kb on - strand, within GFF6270 at 63.241 kb on - strand, within GFF6270 at 63.459 kb on + strand, within GFF6270 at 63.459 kb on + strand, within GFF6270 at 63.460 kb on - strand, within GFF6270 at 63.460 kb on - strand, within GFF6270 at 63.685 kb on + strand at 63.685 kb on + strand at 63.685 kb on + strand at 63.686 kb on - strand at 63.686 kb on - strand at 63.686 kb on - strand at 63.686 kb on - strand at 63.686 kb on - strand at 63.686 kb on - strand at 63.703 kb on + strand at 63.703 kb on + strand at 63.704 kb on - strand at 63.712 kb on + strand, within GFF6272 at 63.712 kb on + strand, within GFF6272 at 63.712 kb on + strand, within GFF6272 at 63.713 kb on - strand, within GFF6272 at 63.713 kb on - strand, within GFF6272 at 63.713 kb on - strand, within GFF6272 at 63.713 kb on - strand, within GFF6272 at 63.713 kb on - strand, within GFF6272 at 63.724 kb on - strand, within GFF6272 at 63.724 kb on - strand, within GFF6272 at 63.727 kb on + strand, within GFF6272 at 63.727 kb on + strand, within GFF6272 at 63.727 kb on + strand, within GFF6272 at 63.728 kb on - strand, within GFF6272 at 64.191 kb on + strand, within GFF6271 at 64.192 kb on - strand, within GFF6271 at 64.356 kb on + strand at 64.356 kb on + strand at 64.356 kb on + strand at 64.357 kb on - strand at 64.357 kb on - strand at 64.357 kb on - strand at 64.357 kb on - strand at 64.357 kb on - strand at 64.357 kb on - strand at 64.589 kb on + strand, within GFF6273 at 64.589 kb on + strand, within GFF6273 at 64.589 kb on + strand, within GFF6273 at 64.589 kb on + strand, within GFF6273 at 64.589 kb on + strand, within GFF6273 at 64.589 kb on + strand, within GFF6273 at 64.590 kb on - strand, within GFF6273 at 64.590 kb on - strand, within GFF6273 at 64.590 kb on - strand, within GFF6273 at 64.590 kb on - strand, within GFF6273 at 64.590 kb on - strand, within GFF6273 at 64.590 kb on - strand, within GFF6273
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 62,736 + GFF6270 0.37 +0.2 62,737 - GFF6270 0.37 -1.1 62,820 + GFF6270 0.43 -0.5 62,820 + GFF6270 0.43 +0.4 62,821 - GFF6270 0.43 -0.4 62,821 - GFF6270 0.43 +0.3 62,821 - GFF6270 0.43 -0.2 63,240 + GFF6270 0.72 +1.0 63,241 - GFF6270 0.72 +0.7 63,241 - GFF6270 0.72 -0.2 63,241 - GFF6270 0.72 -0.0 63,459 + GFF6270 0.87 -0.0 63,459 + GFF6270 0.87 +0.3 63,460 - GFF6270 0.87 -1.0 63,460 - GFF6270 0.87 -0.3 63,685 + +0.1 63,685 + +0.4 63,685 + +1.7 63,686 - +0.6 63,686 - -0.4 63,686 - +0.5 63,686 - -0.1 63,686 - +0.3 63,686 - +0.7 63,703 + -0.1 63,703 + -0.2 63,704 - -0.1 63,712 + GFF6272 0.10 -0.4 63,712 + GFF6272 0.10 -1.1 63,712 + GFF6272 0.10 -0.1 63,713 - GFF6272 0.11 +0.4 63,713 - GFF6272 0.11 -1.4 63,713 - GFF6272 0.11 -0.1 63,713 - GFF6272 0.11 -0.1 63,713 - GFF6272 0.11 +0.9 63,724 - GFF6272 0.19 +0.1 63,724 - GFF6272 0.19 -0.1 63,727 + GFF6272 0.21 -0.5 63,727 + GFF6272 0.21 -1.1 63,727 + GFF6272 0.21 -0.4 63,728 - GFF6272 0.22 -0.1 64,191 + GFF6271 0.68 -0.9 64,192 - GFF6271 0.68 -0.2 64,356 + +0.1 64,356 + -0.3 64,356 + -0.2 64,357 - -0.3 64,357 - -0.6 64,357 - +0.1 64,357 - -1.3 64,357 - +1.1 64,357 - +0.2 64,589 + GFF6273 0.35 +0.4 64,589 + GFF6273 0.35 -0.3 64,589 + GFF6273 0.35 -1.1 64,589 + GFF6273 0.35 -0.2 64,589 + GFF6273 0.35 -0.5 64,589 + GFF6273 0.35 +0.2 64,590 - GFF6273 0.35 +0.0 64,590 - GFF6273 0.35 +1.4 64,590 - GFF6273 0.35 +0.0 64,590 - GFF6273 0.35 -1.6 64,590 - GFF6273 0.35 -0.5 64,590 - GFF6273 0.35 +0.9
Or see this region's nucleotide sequence