Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF623 and GFF624 are separated by 76 nucleotides GFF624 and GFF625 are separated by 175 nucleotides GFF625 and GFF626 are separated by 32 nucleotides
GFF623 - Demethylmenaquinone methyltransferase-like protein, at 670,525 to 671,253
GFF623
GFF624 - hypothetical protein, at 671,330 to 671,680
GFF624
GFF625 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 671,856 to 673,421
GFF625
GFF626 - CzcABC family efflux RND transporter, transmembrane protein, at 673,454 to 676,582
GFF626
Position (kb) 671
672
673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 671.090 kb on + strand, within GFF623 at 671.091 kb on - strand, within GFF623 at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.332 kb on - strand at 671.332 kb on - strand at 671.332 kb on - strand at 671.374 kb on - strand, within GFF624 at 671.520 kb on + strand, within GFF624 at 671.607 kb on + strand, within GFF624 at 672.019 kb on + strand, within GFF625 at 672.019 kb on + strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.647 kb on - strand, within GFF625 at 672.784 kb on + strand, within GFF625 at 672.785 kb on - strand, within GFF625 at 672.785 kb on - strand, within GFF625 at 672.811 kb on + strand, within GFF625 at 672.812 kb on - strand, within GFF625 at 672.812 kb on - strand, within GFF625 at 672.907 kb on + strand, within GFF625 at 672.907 kb on + strand, within GFF625 at 672.908 kb on - strand, within GFF625 at 673.048 kb on + strand, within GFF625 at 673.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 671,090 + GFF623 0.78 +0.2 671,091 - GFF623 0.78 +0.0 671,331 + +0.1 671,331 + +0.2 671,331 + -0.7 671,331 + -0.3 671,331 + +0.0 671,331 + +0.2 671,332 - -1.1 671,332 - -0.3 671,332 - +0.1 671,374 - GFF624 0.13 +0.3 671,520 + GFF624 0.54 -1.0 671,607 + GFF624 0.79 +0.3 672,019 + GFF625 0.10 +0.0 672,019 + GFF625 0.10 +0.0 672,020 - GFF625 0.10 -0.4 672,020 - GFF625 0.10 -0.3 672,020 - GFF625 0.10 +0.0 672,647 - GFF625 0.51 -0.7 672,784 + GFF625 0.59 -1.1 672,785 - GFF625 0.59 +0.5 672,785 - GFF625 0.59 -0.6 672,811 + GFF625 0.61 -2.6 672,812 - GFF625 0.61 -0.9 672,812 - GFF625 0.61 -0.6 672,907 + GFF625 0.67 -0.1 672,907 + GFF625 0.67 -0.1 672,908 - GFF625 0.67 +0.0 673,048 + GFF625 0.76 -1.0 673,334 - -1.2
Or see this region's nucleotide sequence