Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6123 and GFF6124 are separated by 4 nucleotides GFF6124 and GFF6125 overlap by 4 nucleotides GFF6125 and GFF6126 are separated by 55 nucleotides
GFF6123 - ABC-type antimicrobial peptide transport system, ATPase component, at 24,857 to 25,603
GFF6123
GFF6124 - Predicted zinc-binding protein, at 25,608 to 26,186
GFF6124
GFF6125 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 26,183 to 27,091
GFF6125
GFF6126 - putative membrane protein, at 27,147 to 28,079
GFF6126
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.308 kb on + strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 26.250 kb on + strand at 26.250 kb on + strand at 26.739 kb on + strand, within GFF6125 at 26.739 kb on + strand, within GFF6125 at 26.739 kb on + strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.760 kb on + strand, within GFF6125 at 26.943 kb on + strand, within GFF6125 at 26.973 kb on + strand, within GFF6125 at 26.973 kb on + strand, within GFF6125 at 26.973 kb on + strand, within GFF6125 at 26.974 kb on - strand, within GFF6125 at 26.974 kb on - strand, within GFF6125 at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.221 kb on + strand at 27.221 kb on + strand at 27.222 kb on - strand at 27.508 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.844 kb on + strand, within GFF6126 at 27.844 kb on + strand, within GFF6126 at 27.845 kb on - strand, within GFF6126 at 27.845 kb on - strand, within GFF6126
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 25,308 + GFF6123 0.60 -0.2 25,309 - GFF6123 0.61 -0.8 25,309 - GFF6123 0.61 -0.2 26,250 + -0.5 26,250 + -0.1 26,739 + GFF6125 0.61 -1.0 26,739 + GFF6125 0.61 -0.2 26,739 + GFF6125 0.61 -0.4 26,740 - GFF6125 0.61 -1.2 26,740 - GFF6125 0.61 -0.1 26,740 - GFF6125 0.61 -0.4 26,740 - GFF6125 0.61 -1.1 26,740 - GFF6125 0.61 -0.7 26,760 + GFF6125 0.63 -0.3 26,943 + GFF6125 0.84 -0.3 26,973 + GFF6125 0.87 +0.8 26,973 + GFF6125 0.87 -0.4 26,973 + GFF6125 0.87 -1.3 26,974 - GFF6125 0.87 -0.6 26,974 - GFF6125 0.87 -0.1 27,087 + -2.0 27,087 + +0.3 27,087 + -0.1 27,087 + -0.7 27,087 + +2.1 27,087 + +1.5 27,087 + +0.1 27,087 + -0.9 27,087 + +0.4 27,087 + -0.1 27,087 + +0.5 27,087 + +0.1 27,088 - -2.0 27,088 - -1.4 27,088 - -0.4 27,088 - +1.1 27,088 - +0.3 27,088 - -1.7 27,088 - +1.5 27,221 + +0.0 27,221 + -0.8 27,222 - -0.5 27,508 + GFF6126 0.39 +0.7 27,565 + GFF6126 0.45 -1.5 27,565 + GFF6126 0.45 -0.1 27,565 + GFF6126 0.45 -0.9 27,565 + GFF6126 0.45 -0.5 27,565 + GFF6126 0.45 +0.2 27,565 + GFF6126 0.45 +1.1 27,565 + GFF6126 0.45 -0.0 27,566 - GFF6126 0.45 +0.1 27,566 - GFF6126 0.45 +0.1 27,566 - GFF6126 0.45 +0.3 27,566 - GFF6126 0.45 +0.0 27,566 - GFF6126 0.45 -1.0 27,566 - GFF6126 0.45 +0.4 27,566 - GFF6126 0.45 -0.6 27,566 - GFF6126 0.45 -1.0 27,799 + GFF6126 0.70 -0.4 27,799 + GFF6126 0.70 -0.6 27,799 + GFF6126 0.70 -0.7 27,799 + GFF6126 0.70 -0.9 27,799 + GFF6126 0.70 +0.2 27,800 - GFF6126 0.70 -0.3 27,800 - GFF6126 0.70 -0.4 27,800 - GFF6126 0.70 -1.5 27,800 - GFF6126 0.70 +0.8 27,800 - GFF6126 0.70 -0.8 27,800 - GFF6126 0.70 -0.6 27,844 + GFF6126 0.75 -0.8 27,844 + GFF6126 0.75 +1.0 27,845 - GFF6126 0.75 +0.2 27,845 - GFF6126 0.75 -1.5
Or see this region's nucleotide sequence