Strain Fitness in Variovorax sp. SCN45 around GFF611

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF610 and GFF611 are separated by 68 nucleotidesGFF611 and GFF612 are separated by 68 nucleotides GFF610 - hypothetical protein, at 658,081 to 659,037 GFF610 GFF611 - hypothetical protein, at 659,106 to 660,053 GFF611 GFF612 - hypothetical protein, at 660,122 to 661,069 GFF612 Position (kb) 659 660 661Strain fitness (log2 ratio) -2 -1 0 1 2at 658.226 kb on + strand, within GFF610at 658.227 kb on - strand, within GFF610at 658.283 kb on - strand, within GFF610at 658.283 kb on - strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.320 kb on - strand, within GFF610at 658.320 kb on - strand, within GFF610at 658.375 kb on + strand, within GFF610at 658.376 kb on - strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.379 kb on - strand, within GFF610at 658.404 kb on - strand, within GFF610at 658.429 kb on + strand, within GFF610at 658.430 kb on - strand, within GFF610at 658.430 kb on - strand, within GFF610at 658.617 kb on - strand, within GFF610at 658.617 kb on - strand, within GFF610at 658.720 kb on + strand, within GFF610at 658.720 kb on + strand, within GFF610at 658.872 kb on - strand, within GFF610at 658.872 kb on - strand, within GFF610at 659.251 kb on + strand, within GFF611at 659.252 kb on - strand, within GFF611at 659.252 kb on - strand, within GFF611at 659.252 kb on - strand, within GFF611at 659.362 kb on + strand, within GFF611at 659.362 kb on + strand, within GFF611at 659.362 kb on + strand, within GFF611at 659.363 kb on - strand, within GFF611at 659.363 kb on - strand, within GFF611at 659.363 kb on - strand, within GFF611at 659.552 kb on + strand, within GFF611at 659.552 kb on + strand, within GFF611at 659.553 kb on - strand, within GFF611at 659.553 kb on - strand, within GFF611at 659.557 kb on - strand, within GFF611at 660.319 kb on + strand, within GFF612at 660.324 kb on - strand, within GFF612at 660.324 kb on - strand, within GFF612at 660.413 kb on - strand, within GFF612at 660.413 kb on - strand, within GFF612at 660.417 kb on - strand, within GFF612at 660.419 kb on + strand, within GFF612at 660.437 kb on - strand, within GFF612at 660.437 kb on - strand, within GFF612at 660.605 kb on - strand, within GFF612at 660.605 kb on - strand, within GFF612at 660.705 kb on - strand, within GFF612at 660.706 kb on + strand, within GFF612at 660.706 kb on + strand, within GFF612at 660.707 kb on - strand, within GFF612

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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658,226 + GFF610 0.15 -0.5
658,227 - GFF610 0.15 -1.4
658,283 - GFF610 0.21 -0.4
658,283 - GFF610 0.21 -0.2
658,319 + GFF610 0.25 -0.2
658,319 + GFF610 0.25 +0.8
658,319 + GFF610 0.25 -0.1
658,319 + GFF610 0.25 +0.3
658,319 + GFF610 0.25 +0.2
658,319 + GFF610 0.25 -0.8
658,320 - GFF610 0.25 +0.2
658,320 - GFF610 0.25 -0.1
658,375 + GFF610 0.31 -0.1
658,376 - GFF610 0.31 -1.7
658,378 + GFF610 0.31 +0.1
658,378 + GFF610 0.31 -0.3
658,378 + GFF610 0.31 -0.8
658,379 - GFF610 0.31 +0.1
658,404 - GFF610 0.34 +0.1
658,429 + GFF610 0.36 +0.7
658,430 - GFF610 0.36 +0.5
658,430 - GFF610 0.36 -0.5
658,617 - GFF610 0.56 +0.6
658,617 - GFF610 0.56 -0.2
658,720 + GFF610 0.67 -1.5
658,720 + GFF610 0.67 -0.3
658,872 - GFF610 0.83 +0.9
658,872 - GFF610 0.83 -1.0
659,251 + GFF611 0.15 -0.7
659,252 - GFF611 0.15 -1.5
659,252 - GFF611 0.15 -0.4
659,252 - GFF611 0.15 -0.4
659,362 + GFF611 0.27 -0.8
659,362 + GFF611 0.27 -1.2
659,362 + GFF611 0.27 -0.0
659,363 - GFF611 0.27 -1.0
659,363 - GFF611 0.27 -0.9
659,363 - GFF611 0.27 +0.8
659,552 + GFF611 0.47 -1.5
659,552 + GFF611 0.47 -0.4
659,553 - GFF611 0.47 +0.5
659,553 - GFF611 0.47 -0.4
659,557 - GFF611 0.48 -0.1
660,319 + GFF612 0.21 -0.6
660,324 - GFF612 0.21 -1.0
660,324 - GFF612 0.21 +2.1
660,413 - GFF612 0.31 +1.2
660,413 - GFF612 0.31 -0.1
660,417 - GFF612 0.31 -0.6
660,419 + GFF612 0.31 -0.6
660,437 - GFF612 0.33 -2.4
660,437 - GFF612 0.33 -0.3
660,605 - GFF612 0.51 +0.6
660,605 - GFF612 0.51 +0.1
660,705 - GFF612 0.61 +1.1
660,706 + GFF612 0.62 -0.8
660,706 + GFF612 0.62 -0.7
660,707 - GFF612 0.62 -1.0

Or see this region's nucleotide sequence