Strain Fitness in Variovorax sp. SCN45 around GFF5823

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5823 and GFF5824 are separated by 107 nucleotidesGFF5824 and GFF5825 are separated by 20 nucleotides GFF5823 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 1 to 1,128 GFF5823 GFF5824 - no description, at 1,236 to 1,538 GFF5824 GFF5825 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 1,559 to 2,266 GFF5825 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.076 kb on + strandat 0.076 kb on + strandat 0.077 kb on - strandat 0.077 kb on - strandat 0.077 kb on - strandat 0.077 kb on - strandat 0.088 kb on + strandat 0.181 kb on + strand, within GFF5823at 0.181 kb on + strand, within GFF5823at 0.181 kb on + strand, within GFF5823at 0.181 kb on + strand, within GFF5823at 0.181 kb on + strand, within GFF5823at 0.181 kb on + strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.182 kb on - strand, within GFF5823at 0.406 kb on + strand, within GFF5823at 0.406 kb on + strand, within GFF5823at 0.406 kb on + strand, within GFF5823at 0.407 kb on - strand, within GFF5823at 0.407 kb on - strand, within GFF5823at 0.407 kb on - strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.505 kb on + strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.506 kb on - strand, within GFF5823at 0.763 kb on + strand, within GFF5823at 0.763 kb on + strand, within GFF5823at 0.763 kb on + strand, within GFF5823at 0.764 kb on - strand, within GFF5823at 0.835 kb on + strand, within GFF5823at 0.835 kb on + strand, within GFF5823at 0.835 kb on + strand, within GFF5823at 0.835 kb on + strand, within GFF5823at 0.835 kb on + strand, within GFF5823at 0.836 kb on - strand, within GFF5823at 0.836 kb on - strand, within GFF5823at 0.836 kb on - strand, within GFF5823at 0.836 kb on - strand, within GFF5823at 0.836 kb on - strand, within GFF5823at 0.955 kb on + strand, within GFF5823at 0.955 kb on + strand, within GFF5823at 0.955 kb on + strand, within GFF5823at 0.955 kb on + strand, within GFF5823at 0.955 kb on + strand, within GFF5823at 0.955 kb on + strand, within GFF5823at 0.956 kb on - strand, within GFF5823at 0.956 kb on - strand, within GFF5823at 0.956 kb on - strand, within GFF5823at 0.956 kb on - strand, within GFF5823at 0.956 kb on - strand, within GFF5823at 0.956 kb on - strand, within GFF5823at 0.956 kb on - strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.979 kb on + strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 0.980 kb on - strand, within GFF5823at 1.054 kb on + strandat 1.054 kb on + strandat 1.126 kb on + strandat 1.126 kb on + strandat 1.126 kb on + strandat 1.126 kb on + strandat 1.126 kb on + strandat 1.127 kb on - strandat 1.127 kb on - strandat 1.127 kb on - strandat 1.199 kb on + strandat 1.536 kb on + strandat 1.537 kb on - strandat 1.537 kb on - strandat 1.575 kb on + strandat 1.575 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.656 kb on + strand, within GFF5825at 1.656 kb on + strand, within GFF5825at 1.657 kb on - strand, within GFF5825at 1.657 kb on - strand, within GFF5825at 1.657 kb on - strand, within GFF5825at 1.994 kb on + strand, within GFF5825at 1.994 kb on + strand, within GFF5825

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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76 + -0.1
76 + +0.6
77 - +0.1
77 - -0.0
77 - -0.4
77 - -0.4
88 + -0.1
181 + GFF5823 0.16 -0.7
181 + GFF5823 0.16 -1.7
181 + GFF5823 0.16 -0.4
181 + GFF5823 0.16 -0.6
181 + GFF5823 0.16 -0.7
181 + GFF5823 0.16 -0.6
182 - GFF5823 0.16 -0.2
182 - GFF5823 0.16 -1.0
182 - GFF5823 0.16 +0.2
182 - GFF5823 0.16 -0.4
182 - GFF5823 0.16 -0.4
182 - GFF5823 0.16 -0.6
182 - GFF5823 0.16 +0.4
182 - GFF5823 0.16 +0.4
182 - GFF5823 0.16 -0.0
182 - GFF5823 0.16 -0.1
182 - GFF5823 0.16 -0.5
406 + GFF5823 0.36 -0.6
406 + GFF5823 0.36 +0.2
406 + GFF5823 0.36 -0.8
407 - GFF5823 0.36 -0.5
407 - GFF5823 0.36 +0.1
407 - GFF5823 0.36 -0.5
505 + GFF5823 0.45 +0.3
505 + GFF5823 0.45 -0.6
505 + GFF5823 0.45 -1.7
505 + GFF5823 0.45 -0.1
505 + GFF5823 0.45 -0.2
505 + GFF5823 0.45 -0.2
505 + GFF5823 0.45 -0.5
505 + GFF5823 0.45 +0.1
505 + GFF5823 0.45 -0.5
505 + GFF5823 0.45 +0.4
505 + GFF5823 0.45 -0.3
505 + GFF5823 0.45 -0.3
505 + GFF5823 0.45 -1.1
505 + GFF5823 0.45 +0.8
505 + GFF5823 0.45 +0.4
505 + GFF5823 0.45 -0.2
505 + GFF5823 0.45 +0.4
505 + GFF5823 0.45 -0.6
506 - GFF5823 0.45 -0.8
506 - GFF5823 0.45 -0.4
506 - GFF5823 0.45 +0.6
506 - GFF5823 0.45 +0.5
506 - GFF5823 0.45 -0.6
506 - GFF5823 0.45 -0.5
506 - GFF5823 0.45 -0.9
506 - GFF5823 0.45 +0.4
506 - GFF5823 0.45 -0.0
506 - GFF5823 0.45 +0.3
506 - GFF5823 0.45 -0.7
506 - GFF5823 0.45 +1.5
506 - GFF5823 0.45 +0.9
506 - GFF5823 0.45 -0.4
506 - GFF5823 0.45 -1.3
506 - GFF5823 0.45 -0.8
506 - GFF5823 0.45 -0.6
506 - GFF5823 0.45 -0.4
506 - GFF5823 0.45 -0.3
763 + GFF5823 0.68 -0.8
763 + GFF5823 0.68 -0.8
763 + GFF5823 0.68 -0.4
764 - GFF5823 0.68 +0.1
835 + GFF5823 0.74 -0.3
835 + GFF5823 0.74 -0.4
835 + GFF5823 0.74 -0.6
835 + GFF5823 0.74 +0.1
835 + GFF5823 0.74 +0.3
836 - GFF5823 0.74 -0.4
836 - GFF5823 0.74 +0.5
836 - GFF5823 0.74 +0.0
836 - GFF5823 0.74 -0.4
836 - GFF5823 0.74 +0.6
955 + GFF5823 0.85 -1.0
955 + GFF5823 0.85 -0.4
955 + GFF5823 0.85 +0.3
955 + GFF5823 0.85 -0.3
955 + GFF5823 0.85 -1.4
955 + GFF5823 0.85 -0.9
956 - GFF5823 0.85 -0.0
956 - GFF5823 0.85 +1.6
956 - GFF5823 0.85 -2.1
956 - GFF5823 0.85 -0.2
956 - GFF5823 0.85 -0.2
956 - GFF5823 0.85 -1.1
956 - GFF5823 0.85 -0.2
979 + GFF5823 0.87 +0.5
979 + GFF5823 0.87 +0.0
979 + GFF5823 0.87 -2.2
979 + GFF5823 0.87 -0.1
979 + GFF5823 0.87 -1.2
979 + GFF5823 0.87 -1.1
979 + GFF5823 0.87 -0.7
979 + GFF5823 0.87 -0.2
980 - GFF5823 0.87 -1.8
980 - GFF5823 0.87 -0.8
980 - GFF5823 0.87 -1.1
980 - GFF5823 0.87 +1.6
980 - GFF5823 0.87 +0.1
980 - GFF5823 0.87 -0.2
980 - GFF5823 0.87 -0.1
980 - GFF5823 0.87 -0.3
980 - GFF5823 0.87 -0.4
980 - GFF5823 0.87 +0.2
980 - GFF5823 0.87 -1.3
980 - GFF5823 0.87 -0.1
980 - GFF5823 0.87 -1.2
980 - GFF5823 0.87 -0.9
980 - GFF5823 0.87 +0.1
980 - GFF5823 0.87 -0.2
980 - GFF5823 0.87 -0.9
980 - GFF5823 0.87 -1.1
1,054 + -1.1
1,054 + -0.0
1,126 + +0.3
1,126 + +0.3
1,126 + -0.4
1,126 + +0.2
1,126 + -0.3
1,127 - -0.2
1,127 - -0.0
1,127 - -0.7
1,199 + -0.3
1,536 + +0.9
1,537 - -0.2
1,537 - +0.3
1,575 + -0.9
1,575 + -0.5
1,589 + -0.3
1,589 + +0.3
1,590 - +0.4
1,590 - -0.0
1,656 + GFF5825 0.14 +1.4
1,656 + GFF5825 0.14 -0.3
1,657 - GFF5825 0.14 -0.0
1,657 - GFF5825 0.14 -0.7
1,657 - GFF5825 0.14 -0.4
1,994 + GFF5825 0.61 -0.8
1,994 + GFF5825 0.61 +0.1

Or see this region's nucleotide sequence