Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5598 and GFF5599 overlap by 4 nucleotides GFF5599 and GFF5600 overlap by 4 nucleotides GFF5600 and GFF5601 are separated by 9 nucleotides GFF5601 and GFF5602 are separated by 132 nucleotides GFF5602 and GFF5603 are separated by 186 nucleotides
GFF5598 - putative phospholipase D family protein, at 218,379 to 219,659
GFF5598
GFF5599 - hypothetical protein, at 219,656 to 220,087
GFF5599
GFF5600 - no description, at 220,084 to 220,224
GFF5600
GFF5601 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 220,234 to 220,920
GFF5601
GFF5602 - FIG00348944: hypothetical protein, at 221,053 to 221,559
GFF5602
GFF5603 - D-xylose ABC transporter, substrate-binding protein XylF, at 221,746 to 222,768
GFF5603
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 219.390 kb on + strand, within GFF5598 at 219.510 kb on + strand, within GFF5598 at 219.510 kb on + strand, within GFF5598 at 219.510 kb on + strand, within GFF5598 at 219.511 kb on - strand, within GFF5598 at 219.511 kb on - strand, within GFF5598 at 219.582 kb on + strand at 219.582 kb on + strand at 219.582 kb on + strand at 219.582 kb on + strand at 219.583 kb on - strand at 219.583 kb on - strand at 219.583 kb on - strand at 219.583 kb on - strand at 219.657 kb on + strand at 219.657 kb on + strand at 219.657 kb on + strand at 219.658 kb on - strand at 219.658 kb on - strand at 219.658 kb on - strand at 219.658 kb on - strand at 219.658 kb on - strand at 219.750 kb on + strand, within GFF5599 at 219.795 kb on + strand, within GFF5599 at 219.795 kb on + strand, within GFF5599 at 219.795 kb on + strand, within GFF5599 at 219.795 kb on + strand, within GFF5599 at 219.796 kb on - strand, within GFF5599 at 219.796 kb on - strand, within GFF5599 at 219.796 kb on - strand, within GFF5599 at 219.796 kb on - strand, within GFF5599 at 219.813 kb on + strand, within GFF5599 at 219.813 kb on + strand, within GFF5599 at 219.813 kb on + strand, within GFF5599 at 219.813 kb on + strand, within GFF5599 at 219.813 kb on + strand, within GFF5599 at 219.813 kb on + strand, within GFF5599 at 219.814 kb on - strand, within GFF5599 at 219.814 kb on - strand, within GFF5599 at 219.814 kb on - strand, within GFF5599 at 219.814 kb on - strand, within GFF5599 at 219.814 kb on - strand, within GFF5599 at 219.858 kb on + strand, within GFF5599 at 219.858 kb on + strand, within GFF5599 at 219.858 kb on + strand, within GFF5599 at 220.159 kb on + strand, within GFF5600 at 220.159 kb on + strand, within GFF5600 at 220.160 kb on - strand, within GFF5600 at 220.160 kb on - strand, within GFF5600 at 220.178 kb on - strand, within GFF5600 at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.240 kb on - strand at 220.240 kb on - strand at 220.240 kb on - strand at 220.432 kb on + strand, within GFF5601 at 220.432 kb on + strand, within GFF5601 at 220.433 kb on - strand, within GFF5601 at 220.433 kb on - strand, within GFF5601 at 220.433 kb on - strand, within GFF5601 at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.170 kb on + strand, within GFF5602 at 221.171 kb on - strand, within GFF5602 at 221.222 kb on + strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.288 kb on - strand, within GFF5602 at 221.431 kb on + strand, within GFF5602 at 221.671 kb on + strand at 221.689 kb on - strand at 221.692 kb on + strand at 221.700 kb on + strand at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 219,390 + GFF5598 0.79 -0.5 219,510 + GFF5598 0.88 +0.4 219,510 + GFF5598 0.88 -0.3 219,510 + GFF5598 0.88 -0.3 219,511 - GFF5598 0.88 -2.8 219,511 - GFF5598 0.88 -0.0 219,582 + -0.4 219,582 + -0.2 219,582 + +0.0 219,582 + -0.5 219,583 - -0.6 219,583 - -0.2 219,583 - -0.0 219,583 - +0.9 219,657 + +1.7 219,657 + -0.2 219,657 + -0.3 219,658 - -0.3 219,658 - -1.3 219,658 - -0.1 219,658 - -0.0 219,658 - -0.8 219,750 + GFF5599 0.22 +0.1 219,795 + GFF5599 0.32 -0.8 219,795 + GFF5599 0.32 +0.7 219,795 + GFF5599 0.32 -0.3 219,795 + GFF5599 0.32 +0.6 219,796 - GFF5599 0.32 +0.0 219,796 - GFF5599 0.32 -0.4 219,796 - GFF5599 0.32 -0.6 219,796 - GFF5599 0.32 +0.4 219,813 + GFF5599 0.36 +0.1 219,813 + GFF5599 0.36 -0.3 219,813 + GFF5599 0.36 -1.0 219,813 + GFF5599 0.36 -0.2 219,813 + GFF5599 0.36 -0.5 219,813 + GFF5599 0.36 -0.8 219,814 - GFF5599 0.37 -0.9 219,814 - GFF5599 0.37 +0.7 219,814 - GFF5599 0.37 -0.6 219,814 - GFF5599 0.37 +0.1 219,814 - GFF5599 0.37 -1.4 219,858 + GFF5599 0.47 -0.1 219,858 + GFF5599 0.47 -0.3 219,858 + GFF5599 0.47 -0.3 220,159 + GFF5600 0.53 -1.1 220,159 + GFF5600 0.53 -0.2 220,160 - GFF5600 0.54 +0.0 220,160 - GFF5600 0.54 -0.1 220,178 - GFF5600 0.67 +0.0 220,239 + +0.1 220,239 + +0.6 220,239 + -0.1 220,239 + +0.1 220,239 + -0.7 220,239 + -0.7 220,240 - +0.2 220,240 - -2.3 220,240 - -0.4 220,432 + GFF5601 0.29 -1.0 220,432 + GFF5601 0.29 -1.8 220,433 - GFF5601 0.29 -0.1 220,433 - GFF5601 0.29 +0.1 220,433 - GFF5601 0.29 -1.3 221,059 + -1.6 221,059 + -0.8 221,059 + -1.2 221,059 + +0.2 221,059 + +0.5 221,059 + +0.7 221,059 + +1.2 221,060 - -0.2 221,060 - -0.3 221,060 - -0.2 221,060 - -0.8 221,060 - +1.7 221,060 - -0.4 221,060 - -1.0 221,170 + GFF5602 0.23 +0.3 221,171 - GFF5602 0.23 -1.0 221,222 + GFF5602 0.33 -0.1 221,223 - GFF5602 0.34 -0.6 221,223 - GFF5602 0.34 +0.4 221,223 - GFF5602 0.34 -1.4 221,223 - GFF5602 0.34 -1.3 221,223 - GFF5602 0.34 +0.3 221,223 - GFF5602 0.34 -0.3 221,288 - GFF5602 0.46 +0.8 221,431 + GFF5602 0.75 -0.3 221,671 + +0.8 221,689 - +0.4 221,692 + -1.0 221,700 + -0.4 221,908 + GFF5603 0.16 +0.4 221,908 + GFF5603 0.16 +0.1 221,908 + GFF5603 0.16 -0.0 221,908 + GFF5603 0.16 +0.3 221,908 + GFF5603 0.16 +1.4 221,908 + GFF5603 0.16 +0.3 221,908 + GFF5603 0.16 +1.1 221,909 - GFF5603 0.16 +0.5 221,909 - GFF5603 0.16 -1.0 221,909 - GFF5603 0.16 +0.2 221,909 - GFF5603 0.16 -1.2
Or see this region's nucleotide sequence