Strain Fitness in Variovorax sp. SCN45 around GFF5579

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5577 and GFF5578 overlap by 4 nucleotidesGFF5578 and GFF5579 are separated by 1 nucleotidesGFF5579 and GFF5580 are separated by 124 nucleotides GFF5577 - Enoyl-CoA hydratase (EC 4.2.1.17), at 197,628 to 198,482 GFF5577 GFF5578 - Transcriptional regulator, MarR family, at 198,479 to 198,958 GFF5578 GFF5579 - probable bifunctional hydroxylase/oxidoreductase, at 198,960 to 201,338 GFF5579 GFF5580 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 201,463 to 202,743 GFF5580 Position (kb) 198 199 200 201 202Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 198.046 kb on + strand, within GFF5577at 198.289 kb on + strand, within GFF5577at 198.289 kb on + strand, within GFF5577at 198.289 kb on + strand, within GFF5577at 198.290 kb on - strand, within GFF5577at 198.394 kb on + strand, within GFF5577at 198.395 kb on - strand, within GFF5577at 198.421 kb on + strandat 198.422 kb on - strandat 198.422 kb on - strandat 198.422 kb on - strandat 198.472 kb on + strandat 198.472 kb on + strandat 198.473 kb on - strandat 198.473 kb on - strandat 198.473 kb on - strandat 199.027 kb on + strandat 199.028 kb on - strandat 199.028 kb on - strandat 199.028 kb on - strandat 199.051 kb on + strandat 199.051 kb on + strandat 199.051 kb on + strandat 199.052 kb on - strandat 199.052 kb on - strandat 199.052 kb on - strandat 199.264 kb on + strand, within GFF5579at 199.264 kb on + strand, within GFF5579at 199.264 kb on + strand, within GFF5579at 199.265 kb on - strand, within GFF5579at 199.265 kb on - strand, within GFF5579at 199.265 kb on - strand, within GFF5579at 199.276 kb on + strand, within GFF5579at 199.276 kb on + strand, within GFF5579at 199.276 kb on + strand, within GFF5579at 199.277 kb on - strand, within GFF5579at 199.507 kb on + strand, within GFF5579at 199.507 kb on + strand, within GFF5579at 199.507 kb on + strand, within GFF5579at 199.879 kb on + strand, within GFF5579at 199.879 kb on + strand, within GFF5579at 199.879 kb on + strand, within GFF5579at 199.879 kb on + strand, within GFF5579at 199.879 kb on + strand, within GFF5579at 199.880 kb on - strand, within GFF5579at 199.880 kb on - strand, within GFF5579at 199.880 kb on - strand, within GFF5579at 200.020 kb on + strand, within GFF5579at 200.020 kb on + strand, within GFF5579at 200.020 kb on + strand, within GFF5579at 200.021 kb on - strand, within GFF5579at 200.021 kb on - strand, within GFF5579at 200.077 kb on + strand, within GFF5579at 200.077 kb on + strand, within GFF5579at 200.078 kb on - strand, within GFF5579at 200.078 kb on - strand, within GFF5579at 200.078 kb on - strand, within GFF5579at 200.128 kb on + strand, within GFF5579at 200.203 kb on + strand, within GFF5579at 200.204 kb on - strand, within GFF5579at 200.233 kb on + strand, within GFF5579at 200.234 kb on - strand, within GFF5579at 200.234 kb on - strand, within GFF5579at 200.234 kb on - strand, within GFF5579at 200.317 kb on + strand, within GFF5579at 200.318 kb on - strand, within GFF5579at 200.581 kb on + strand, within GFF5579at 200.581 kb on + strand, within GFF5579at 200.581 kb on + strand, within GFF5579at 200.581 kb on + strand, within GFF5579at 200.581 kb on + strand, within GFF5579at 200.582 kb on - strand, within GFF5579at 200.707 kb on + strand, within GFF5579at 200.707 kb on + strand, within GFF5579at 200.707 kb on + strand, within GFF5579at 200.839 kb on + strand, within GFF5579at 200.896 kb on + strand, within GFF5579at 200.896 kb on + strand, within GFF5579at 200.897 kb on - strand, within GFF5579at 200.897 kb on - strand, within GFF5579at 201.245 kb on - strandat 201.245 kb on - strandat 201.389 kb on + strandat 201.389 kb on + strandat 201.390 kb on - strandat 201.390 kb on - strandat 201.390 kb on - strandat 201.390 kb on - strandat 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.652 kb on + strand, within GFF5580at 201.653 kb on - strand, within GFF5580at 201.653 kb on - strand, within GFF5580at 201.653 kb on - strand, within GFF5580at 201.653 kb on - strand, within GFF5580at 201.653 kb on - strand, within GFF5580at 201.674 kb on + strand, within GFF5580at 201.674 kb on + strand, within GFF5580at 201.674 kb on + strand, within GFF5580at 201.674 kb on + strand, within GFF5580at 201.674 kb on + strand, within GFF5580at 201.674 kb on + strand, within GFF5580at 201.674 kb on + strand, within GFF5580at 201.675 kb on - strand, within GFF5580at 201.675 kb on - strand, within GFF5580at 201.675 kb on - strand, within GFF5580at 201.675 kb on - strand, within GFF5580at 201.832 kb on + strand, within GFF5580at 201.832 kb on + strand, within GFF5580at 201.832 kb on + strand, within GFF5580at 201.853 kb on + strand, within GFF5580at 201.854 kb on - strand, within GFF5580at 201.854 kb on - strand, within GFF5580at 201.861 kb on - strand, within GFF5580at 201.861 kb on - strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.895 kb on + strand, within GFF5580at 201.895 kb on + strand, within GFF5580at 201.896 kb on - strand, within GFF5580at 201.896 kb on - strand, within GFF5580at 201.988 kb on + strand, within GFF5580at 201.989 kb on - strand, within GFF5580at 201.989 kb on - strand, within GFF5580at 202.043 kb on - strand, within GFF5580at 202.043 kb on - strand, within GFF5580at 202.154 kb on - strand, within GFF5580at 202.240 kb on + strand, within GFF5580at 202.240 kb on + strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.318 kb on + strand, within GFF5580at 202.318 kb on + strand, within GFF5580at 202.319 kb on - strand, within GFF5580

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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198,046 + GFF5577 0.49 +0.0
198,289 + GFF5577 0.77 -1.0
198,289 + GFF5577 0.77 -0.1
198,289 + GFF5577 0.77 +0.6
198,290 - GFF5577 0.77 +1.4
198,394 + GFF5577 0.90 -0.6
198,395 - GFF5577 0.90 -0.5
198,421 + -1.1
198,422 - -1.3
198,422 - -0.5
198,422 - +0.0
198,472 + -0.3
198,472 + +0.1
198,473 - -0.3
198,473 - -1.3
198,473 - +1.7
199,027 + -0.4
199,028 - -1.0
199,028 - -0.9
199,028 - -1.4
199,051 + -0.1
199,051 + -0.1
199,051 + -0.1
199,052 - -0.2
199,052 - -0.3
199,052 - -0.3
199,264 + GFF5579 0.13 -0.5
199,264 + GFF5579 0.13 -0.3
199,264 + GFF5579 0.13 +0.4
199,265 - GFF5579 0.13 +0.2
199,265 - GFF5579 0.13 -0.3
199,265 - GFF5579 0.13 -0.5
199,276 + GFF5579 0.13 -0.3
199,276 + GFF5579 0.13 +0.3
199,276 + GFF5579 0.13 -0.5
199,277 - GFF5579 0.13 -0.5
199,507 + GFF5579 0.23 -1.5
199,507 + GFF5579 0.23 +0.1
199,507 + GFF5579 0.23 -0.1
199,879 + GFF5579 0.39 -0.5
199,879 + GFF5579 0.39 -0.1
199,879 + GFF5579 0.39 -0.5
199,879 + GFF5579 0.39 -0.6
199,879 + GFF5579 0.39 -0.9
199,880 - GFF5579 0.39 +0.5
199,880 - GFF5579 0.39 -0.2
199,880 - GFF5579 0.39 -0.8
200,020 + GFF5579 0.45 -2.3
200,020 + GFF5579 0.45 -0.4
200,020 + GFF5579 0.45 -0.7
200,021 - GFF5579 0.45 -0.3
200,021 - GFF5579 0.45 -1.0
200,077 + GFF5579 0.47 -0.2
200,077 + GFF5579 0.47 -1.6
200,078 - GFF5579 0.47 +0.2
200,078 - GFF5579 0.47 -0.7
200,078 - GFF5579 0.47 -0.2
200,128 + GFF5579 0.49 +0.7
200,203 + GFF5579 0.52 +0.3
200,204 - GFF5579 0.52 +0.8
200,233 + GFF5579 0.54 -0.5
200,234 - GFF5579 0.54 -0.7
200,234 - GFF5579 0.54 -0.3
200,234 - GFF5579 0.54 -1.4
200,317 + GFF5579 0.57 -0.1
200,318 - GFF5579 0.57 +0.1
200,581 + GFF5579 0.68 -0.4
200,581 + GFF5579 0.68 -0.2
200,581 + GFF5579 0.68 -0.9
200,581 + GFF5579 0.68 +0.5
200,581 + GFF5579 0.68 -4.6
200,582 - GFF5579 0.68 +0.7
200,707 + GFF5579 0.73 -0.6
200,707 + GFF5579 0.73 -0.4
200,707 + GFF5579 0.73 -2.3
200,839 + GFF5579 0.79 +0.6
200,896 + GFF5579 0.81 -0.1
200,896 + GFF5579 0.81 -0.1
200,897 - GFF5579 0.81 -1.3
200,897 - GFF5579 0.81 +0.2
201,245 - -0.5
201,245 - -0.6
201,389 + -0.5
201,389 + -1.6
201,390 - -1.5
201,390 - -0.8
201,390 - -0.2
201,390 - -0.4
201,652 + GFF5580 0.15 -0.6
201,652 + GFF5580 0.15 -0.8
201,652 + GFF5580 0.15 -1.5
201,652 + GFF5580 0.15 -0.8
201,652 + GFF5580 0.15 -0.6
201,652 + GFF5580 0.15 +1.1
201,652 + GFF5580 0.15 -0.0
201,652 + GFF5580 0.15 -0.1
201,652 + GFF5580 0.15 -0.7
201,652 + GFF5580 0.15 -0.2
201,653 - GFF5580 0.15 +0.6
201,653 - GFF5580 0.15 -1.1
201,653 - GFF5580 0.15 -0.2
201,653 - GFF5580 0.15 +0.1
201,653 - GFF5580 0.15 -0.3
201,674 + GFF5580 0.16 -0.3
201,674 + GFF5580 0.16 -0.5
201,674 + GFF5580 0.16 +0.0
201,674 + GFF5580 0.16 -1.4
201,674 + GFF5580 0.16 +1.4
201,674 + GFF5580 0.16 +1.0
201,674 + GFF5580 0.16 +1.2
201,675 - GFF5580 0.17 -1.0
201,675 - GFF5580 0.17 +0.0
201,675 - GFF5580 0.17 +0.4
201,675 - GFF5580 0.17 -0.2
201,832 + GFF5580 0.29 +0.1
201,832 + GFF5580 0.29 -0.3
201,832 + GFF5580 0.29 -2.4
201,853 + GFF5580 0.30 -0.0
201,854 - GFF5580 0.31 -2.2
201,854 - GFF5580 0.31 -0.5
201,861 - GFF5580 0.31 -0.8
201,861 - GFF5580 0.31 +0.9
201,883 + GFF5580 0.33 +1.7
201,883 + GFF5580 0.33 -0.7
201,883 + GFF5580 0.33 -0.1
201,883 + GFF5580 0.33 -0.2
201,883 + GFF5580 0.33 +0.7
201,884 - GFF5580 0.33 +0.1
201,884 - GFF5580 0.33 -0.3
201,884 - GFF5580 0.33 -0.8
201,884 - GFF5580 0.33 +0.1
201,895 + GFF5580 0.34 +0.3
201,895 + GFF5580 0.34 -0.5
201,896 - GFF5580 0.34 +0.2
201,896 - GFF5580 0.34 -0.0
201,988 + GFF5580 0.41 +2.7
201,989 - GFF5580 0.41 +0.5
201,989 - GFF5580 0.41 +0.1
202,043 - GFF5580 0.45 -0.2
202,043 - GFF5580 0.45 -0.5
202,154 - GFF5580 0.54 -0.9
202,240 + GFF5580 0.61 -1.6
202,240 + GFF5580 0.61 -0.4
202,241 - GFF5580 0.61 -0.6
202,241 - GFF5580 0.61 +0.6
202,241 - GFF5580 0.61 +0.1
202,241 - GFF5580 0.61 +0.3
202,241 - GFF5580 0.61 +0.5
202,318 + GFF5580 0.67 -0.5
202,318 + GFF5580 0.67 -0.2
202,319 - GFF5580 0.67 +1.3

Or see this region's nucleotide sequence