Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5505 and GFF5506 are separated by 136 nucleotides GFF5506 and GFF5507 are separated by 35 nucleotides
GFF5505 - 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7), at 136,501 to 137,517
GFF5505
GFF5506 - Transcriptional regulator Bmul_5214, AsnC family, at 137,654 to 138,139
GFF5506
GFF5507 - Esterase/lipase/thioesterase family protein, at 138,175 to 139,113
GFF5507
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.715 kb on + strand, within GFF5505 at 136.715 kb on + strand, within GFF5505 at 136.716 kb on - strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.943 kb on + strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 136.944 kb on - strand, within GFF5505 at 137.189 kb on + strand, within GFF5505 at 137.189 kb on + strand, within GFF5505 at 137.189 kb on + strand, within GFF5505 at 137.189 kb on + strand, within GFF5505 at 137.189 kb on + strand, within GFF5505 at 137.189 kb on + strand, within GFF5505 at 137.189 kb on + strand, within GFF5505 at 137.190 kb on - strand, within GFF5505 at 137.190 kb on - strand, within GFF5505 at 137.190 kb on - strand, within GFF5505 at 137.190 kb on - strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.204 kb on + strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.205 kb on - strand, within GFF5505 at 137.319 kb on - strand, within GFF5505 at 137.319 kb on - strand, within GFF5505 at 137.348 kb on + strand, within GFF5505 at 137.348 kb on + strand, within GFF5505 at 137.348 kb on + strand, within GFF5505 at 137.349 kb on - strand, within GFF5505 at 137.349 kb on - strand, within GFF5505 at 137.349 kb on - strand, within GFF5505 at 137.349 kb on - strand, within GFF5505 at 137.414 kb on + strand, within GFF5505 at 137.414 kb on + strand, within GFF5505 at 137.414 kb on + strand, within GFF5505 at 137.414 kb on + strand, within GFF5505 at 137.415 kb on - strand, within GFF5505 at 137.415 kb on - strand, within GFF5505 at 137.415 kb on - strand, within GFF5505 at 137.553 kb on - strand at 137.845 kb on - strand, within GFF5506 at 137.845 kb on - strand, within GFF5506 at 137.845 kb on - strand, within GFF5506 at 137.845 kb on - strand, within GFF5506 at 137.996 kb on + strand, within GFF5506 at 137.996 kb on + strand, within GFF5506 at 137.996 kb on + strand, within GFF5506 at 137.997 kb on - strand, within GFF5506 at 137.997 kb on - strand, within GFF5506 at 137.997 kb on - strand, within GFF5506 at 137.997 kb on - strand, within GFF5506 at 137.997 kb on - strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.062 kb on + strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.063 kb on - strand, within GFF5506 at 138.165 kb on + strand at 138.165 kb on + strand at 138.165 kb on + strand at 138.165 kb on + strand at 138.165 kb on + strand at 138.165 kb on + strand at 138.165 kb on + strand at 138.165 kb on + strand at 138.166 kb on - strand at 138.166 kb on - strand at 138.166 kb on - strand at 138.166 kb on - strand at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.319 kb on + strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.320 kb on - strand, within GFF5507 at 138.343 kb on + strand, within GFF5507 at 138.343 kb on + strand, within GFF5507 at 138.376 kb on + strand, within GFF5507 at 138.376 kb on + strand, within GFF5507 at 138.376 kb on + strand, within GFF5507 at 138.376 kb on + strand, within GFF5507 at 138.376 kb on + strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.377 kb on - strand, within GFF5507 at 138.529 kb on + strand, within GFF5507 at 138.529 kb on + strand, within GFF5507 at 138.553 kb on + strand, within GFF5507 at 138.553 kb on + strand, within GFF5507 at 138.554 kb on - strand, within GFF5507 at 138.554 kb on - strand, within GFF5507 at 138.554 kb on - strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.640 kb on + strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.641 kb on - strand, within GFF5507 at 138.667 kb on + strand, within GFF5507 at 138.667 kb on + strand, within GFF5507 at 138.667 kb on + strand, within GFF5507 at 138.667 kb on + strand, within GFF5507 at 138.667 kb on + strand, within GFF5507 at 138.667 kb on + strand, within GFF5507 at 138.668 kb on - strand, within GFF5507 at 138.668 kb on - strand, within GFF5507 at 138.668 kb on - strand, within GFF5507 at 138.668 kb on - strand, within GFF5507 at 138.678 kb on + strand, within GFF5507 at 138.678 kb on + strand, within GFF5507 at 138.678 kb on + strand, within GFF5507 at 138.678 kb on + strand, within GFF5507 at 138.679 kb on - strand, within GFF5507 at 138.679 kb on - strand, within GFF5507 at 138.679 kb on - strand, within GFF5507 at 138.679 kb on - strand, within GFF5507 at 138.763 kb on + strand, within GFF5507 at 138.764 kb on - strand, within GFF5507 at 138.764 kb on - strand, within GFF5507 at 138.764 kb on - strand, within GFF5507 at 138.907 kb on + strand, within GFF5507 at 138.907 kb on + strand, within GFF5507 at 138.907 kb on + strand, within GFF5507 at 139.067 kb on - strand at 139.111 kb on + strand at 139.112 kb on - strand at 139.112 kb on - strand at 139.122 kb on + strand at 139.123 kb on - strand at 139.123 kb on - strand at 139.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 136,715 + GFF5505 0.21 +0.5 136,715 + GFF5505 0.21 -0.2 136,716 - GFF5505 0.21 +0.3 136,943 + GFF5505 0.43 -0.1 136,943 + GFF5505 0.43 -0.3 136,943 + GFF5505 0.43 +0.1 136,943 + GFF5505 0.43 -0.3 136,943 + GFF5505 0.43 +0.3 136,943 + GFF5505 0.43 -0.8 136,943 + GFF5505 0.43 +1.1 136,943 + GFF5505 0.43 +1.0 136,943 + GFF5505 0.43 -1.5 136,943 + GFF5505 0.43 -0.5 136,943 + GFF5505 0.43 -0.1 136,943 + GFF5505 0.43 -0.6 136,944 - GFF5505 0.44 -0.1 136,944 - GFF5505 0.44 -0.9 136,944 - GFF5505 0.44 -0.2 136,944 - GFF5505 0.44 -0.3 136,944 - GFF5505 0.44 +0.3 136,944 - GFF5505 0.44 +0.4 136,944 - GFF5505 0.44 +0.0 136,944 - GFF5505 0.44 +2.3 136,944 - GFF5505 0.44 +0.4 136,944 - GFF5505 0.44 -1.5 136,944 - GFF5505 0.44 -0.5 136,944 - GFF5505 0.44 +0.7 136,944 - GFF5505 0.44 -0.6 137,189 + GFF5505 0.68 +0.1 137,189 + GFF5505 0.68 +0.1 137,189 + GFF5505 0.68 -0.5 137,189 + GFF5505 0.68 -0.4 137,189 + GFF5505 0.68 -2.0 137,189 + GFF5505 0.68 -0.1 137,189 + GFF5505 0.68 -0.1 137,190 - GFF5505 0.68 -0.1 137,190 - GFF5505 0.68 +0.2 137,190 - GFF5505 0.68 -0.1 137,190 - GFF5505 0.68 +0.1 137,204 + GFF5505 0.69 -0.4 137,204 + GFF5505 0.69 +0.2 137,204 + GFF5505 0.69 +1.4 137,204 + GFF5505 0.69 -0.3 137,204 + GFF5505 0.69 -0.6 137,204 + GFF5505 0.69 -0.7 137,204 + GFF5505 0.69 -0.1 137,204 + GFF5505 0.69 -0.1 137,204 + GFF5505 0.69 -0.1 137,205 - GFF5505 0.69 +0.8 137,205 - GFF5505 0.69 -1.1 137,205 - GFF5505 0.69 -1.5 137,205 - GFF5505 0.69 -0.1 137,205 - GFF5505 0.69 -0.4 137,205 - GFF5505 0.69 -0.6 137,205 - GFF5505 0.69 -1.1 137,205 - GFF5505 0.69 -0.6 137,205 - GFF5505 0.69 -0.1 137,205 - GFF5505 0.69 -0.3 137,205 - GFF5505 0.69 -0.5 137,319 - GFF5505 0.80 +0.7 137,319 - GFF5505 0.80 +0.4 137,348 + GFF5505 0.83 -0.8 137,348 + GFF5505 0.83 -0.1 137,348 + GFF5505 0.83 +0.1 137,349 - GFF5505 0.83 +0.4 137,349 - GFF5505 0.83 +0.8 137,349 - GFF5505 0.83 +0.1 137,349 - GFF5505 0.83 +0.1 137,414 + GFF5505 0.90 -0.4 137,414 + GFF5505 0.90 -0.4 137,414 + GFF5505 0.90 -0.1 137,414 + GFF5505 0.90 +0.1 137,415 - GFF5505 0.90 +0.0 137,415 - GFF5505 0.90 -0.2 137,415 - GFF5505 0.90 +0.1 137,553 - -1.9 137,845 - GFF5506 0.39 +1.3 137,845 - GFF5506 0.39 -1.1 137,845 - GFF5506 0.39 -0.3 137,845 - GFF5506 0.39 +1.3 137,996 + GFF5506 0.70 -0.4 137,996 + GFF5506 0.70 -1.3 137,996 + GFF5506 0.70 +0.7 137,997 - GFF5506 0.71 -0.3 137,997 - GFF5506 0.71 +0.0 137,997 - GFF5506 0.71 +0.5 137,997 - GFF5506 0.71 -0.2 137,997 - GFF5506 0.71 +1.1 138,062 + GFF5506 0.84 +0.1 138,062 + GFF5506 0.84 +1.5 138,062 + GFF5506 0.84 -0.5 138,062 + GFF5506 0.84 -2.1 138,062 + GFF5506 0.84 -0.5 138,062 + GFF5506 0.84 -0.0 138,062 + GFF5506 0.84 +0.3 138,062 + GFF5506 0.84 -0.3 138,062 + GFF5506 0.84 -0.2 138,062 + GFF5506 0.84 +0.1 138,062 + GFF5506 0.84 -0.4 138,063 - GFF5506 0.84 -0.5 138,063 - GFF5506 0.84 +2.4 138,063 - GFF5506 0.84 -0.7 138,063 - GFF5506 0.84 +0.7 138,063 - GFF5506 0.84 -0.4 138,063 - GFF5506 0.84 -0.2 138,063 - GFF5506 0.84 -0.4 138,063 - GFF5506 0.84 -0.8 138,063 - GFF5506 0.84 +0.6 138,063 - GFF5506 0.84 +0.8 138,165 + -0.5 138,165 + -0.2 138,165 + -1.7 138,165 + -0.7 138,165 + -1.6 138,165 + -0.4 138,165 + -0.5 138,165 + -1.2 138,166 - -0.7 138,166 - -0.2 138,166 - -0.0 138,166 - -0.3 138,319 + GFF5507 0.15 +2.0 138,319 + GFF5507 0.15 -0.3 138,319 + GFF5507 0.15 -0.9 138,319 + GFF5507 0.15 +1.3 138,319 + GFF5507 0.15 +1.7 138,319 + GFF5507 0.15 -0.2 138,319 + GFF5507 0.15 -2.1 138,319 + GFF5507 0.15 -0.3 138,319 + GFF5507 0.15 -0.4 138,320 - GFF5507 0.15 +0.2 138,320 - GFF5507 0.15 -1.0 138,320 - GFF5507 0.15 -1.9 138,320 - GFF5507 0.15 -0.5 138,320 - GFF5507 0.15 -0.1 138,320 - GFF5507 0.15 -0.3 138,320 - GFF5507 0.15 +0.1 138,320 - GFF5507 0.15 +0.5 138,320 - GFF5507 0.15 +1.1 138,320 - GFF5507 0.15 -0.0 138,343 + GFF5507 0.18 +1.0 138,343 + GFF5507 0.18 -0.7 138,376 + GFF5507 0.21 -0.2 138,376 + GFF5507 0.21 -0.8 138,376 + GFF5507 0.21 +0.5 138,376 + GFF5507 0.21 -0.7 138,376 + GFF5507 0.21 -0.6 138,377 - GFF5507 0.22 -0.1 138,377 - GFF5507 0.22 +2.0 138,377 - GFF5507 0.22 +0.2 138,377 - GFF5507 0.22 -0.6 138,377 - GFF5507 0.22 -0.2 138,377 - GFF5507 0.22 -0.6 138,377 - GFF5507 0.22 -0.7 138,377 - GFF5507 0.22 -2.2 138,529 + GFF5507 0.38 -0.1 138,529 + GFF5507 0.38 -0.3 138,553 + GFF5507 0.40 -0.1 138,553 + GFF5507 0.40 +0.7 138,554 - GFF5507 0.40 -0.2 138,554 - GFF5507 0.40 -0.5 138,554 - GFF5507 0.40 +1.3 138,640 + GFF5507 0.50 -0.2 138,640 + GFF5507 0.50 -0.4 138,640 + GFF5507 0.50 -0.5 138,640 + GFF5507 0.50 -0.6 138,640 + GFF5507 0.50 -0.5 138,640 + GFF5507 0.50 -2.0 138,640 + GFF5507 0.50 -0.1 138,640 + GFF5507 0.50 -0.4 138,640 + GFF5507 0.50 -1.8 138,641 - GFF5507 0.50 -0.6 138,641 - GFF5507 0.50 -0.6 138,641 - GFF5507 0.50 +0.7 138,641 - GFF5507 0.50 +0.3 138,641 - GFF5507 0.50 -0.9 138,641 - GFF5507 0.50 -0.4 138,641 - GFF5507 0.50 -0.7 138,641 - GFF5507 0.50 +0.3 138,641 - GFF5507 0.50 +0.3 138,641 - GFF5507 0.50 +1.7 138,667 + GFF5507 0.52 -0.2 138,667 + GFF5507 0.52 -0.6 138,667 + GFF5507 0.52 +1.1 138,667 + GFF5507 0.52 +0.4 138,667 + GFF5507 0.52 -0.9 138,667 + GFF5507 0.52 -0.1 138,668 - GFF5507 0.53 -0.3 138,668 - GFF5507 0.53 -0.4 138,668 - GFF5507 0.53 -0.1 138,668 - GFF5507 0.53 +0.5 138,678 + GFF5507 0.54 +0.1 138,678 + GFF5507 0.54 -2.5 138,678 + GFF5507 0.54 -0.8 138,678 + GFF5507 0.54 +1.0 138,679 - GFF5507 0.54 -0.8 138,679 - GFF5507 0.54 -0.1 138,679 - GFF5507 0.54 -0.5 138,679 - GFF5507 0.54 +0.3 138,763 + GFF5507 0.63 -0.2 138,764 - GFF5507 0.63 -0.5 138,764 - GFF5507 0.63 -0.6 138,764 - GFF5507 0.63 -0.4 138,907 + GFF5507 0.78 -0.3 138,907 + GFF5507 0.78 -0.4 138,907 + GFF5507 0.78 +0.0 139,067 - +0.6 139,111 + -1.6 139,112 - +0.1 139,112 - -2.5 139,122 + -0.4 139,123 - +0.1 139,123 - -1.2 139,123 - +0.7
Or see this region's nucleotide sequence