Strain Fitness in Variovorax sp. SCN45 around GFF5407

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
30,809	+				+0.0
30,809	+				-0.6
30,809	+				+1.0
30,809	+				-0.6
30,810	-				-1.4
30,810	-				-1.3
30,810	-				-0.3
30,810	-				+0.7
30,810	-				-0.3
30,810	-				-0.8
30,868	+				-0.7
30,868	+				+1.0
30,869	-				+0.1
30,934	+				-0.4
30,962	+				+0.2
30,962	+				-0.5
30,962	+				-0.3
30,962	+				-1.8
30,963	-				+0.6
30,963	-				-0.1
31,070	+		GFF5407	0.20	+0.7
31,070	+		GFF5407	0.20	-1.3
31,070	+		GFF5407	0.20	-1.2
31,070	+		GFF5407	0.20	-0.6
31,071	-		GFF5407	0.20	-1.2
31,071	-		GFF5407	0.20	-0.9
31,071	-		GFF5407	0.20	-1.1
31,147	+		GFF5407	0.32	-1.9
31,147	+		GFF5407	0.32	-0.6
31,147	+		GFF5407	0.32	-1.4
31,147	+		GFF5407	0.32	-0.0
31,147	+		GFF5407	0.32	+1.2
31,147	+		GFF5407	0.32	-0.1
31,147	+		GFF5407	0.32	-0.8
31,148	-		GFF5407	0.32	-0.9
31,148	-		GFF5407	0.32	+0.2
31,148	-		GFF5407	0.32	-0.0
31,237	+		GFF5407	0.45	-0.2
31,237	+		GFF5407	0.45	-0.3
31,237	+		GFF5407	0.45	-0.3
31,237	+		GFF5407	0.45	-0.3
31,237	+		GFF5407	0.45	-0.2
31,237	+		GFF5407	0.45	-0.2
31,237	+		GFF5407	0.45	+0.0
31,238	-		GFF5407	0.45	-0.8
31,238	-		GFF5407	0.45	-1.0
31,238	-		GFF5407	0.45	-0.3
31,238	-		GFF5407	0.45	+0.1
31,392	+		GFF5407	0.67	+0.0
31,392	+		GFF5407	0.67	+0.0
31,392	+		GFF5407	0.67	-0.9
31,392	+		GFF5407	0.67	-0.2
31,392	+		GFF5407	0.67	+0.3
31,392	+		GFF5407	0.67	+0.2
31,392	+		GFF5407	0.67	+0.4
31,392	+		GFF5407	0.67	+3.0
31,392	+		GFF5407	0.67	+0.2
31,392	+		GFF5407	0.67	+0.1
31,392	+		GFF5407	0.67	+0.5
31,392	+		GFF5407	0.67	-0.9
31,392	+		GFF5407	0.67	-0.5
31,392	+		GFF5407	0.67	-0.3
31,392	+		GFF5407	0.67	+1.1
31,392	+		GFF5407	0.67	+0.1
31,392	+		GFF5407	0.67	-1.1
31,392	+		GFF5407	0.67	-0.2
31,392	+		GFF5407	0.67	+0.1
31,393	-		GFF5407	0.68	-1.2
31,393	-		GFF5407	0.68	-1.4
31,393	-		GFF5407	0.68	+1.0
31,393	-		GFF5407	0.68	-0.6
31,393	-		GFF5407	0.68	-0.5
31,393	-		GFF5407	0.68	-0.6
31,393	-		GFF5407	0.68	+0.2
31,393	-		GFF5407	0.68	+0.9
31,393	-		GFF5407	0.68	-0.8
31,393	-		GFF5407	0.68	-0.6
31,393	-		GFF5407	0.68	-0.5
31,393	-		GFF5407	0.68	-0.3
31,393	-		GFF5407	0.68	+0.1
31,393	-		GFF5407	0.68	-1.3
31,393	-		GFF5407	0.68	-0.3
31,393	-		GFF5407	0.68	+0.2
31,393	-		GFF5407	0.68	-0.0
31,531	+		GFF5407	0.88	-0.5
31,531	+		GFF5407	0.88	-0.8
31,531	+		GFF5407	0.88	+0.0
31,531	+		GFF5407	0.88	-0.3
31,531	+		GFF5407	0.88	-0.7
31,531	+		GFF5407	0.88	-1.9
31,531	+		GFF5407	0.88	+0.3
31,531	+		GFF5407	0.88	-0.9
31,531	+		GFF5407	0.88	+0.4
31,531	+		GFF5407	0.88	-0.6
31,531	+		GFF5407	0.88	-0.9
31,531	+		GFF5407	0.88	-0.0
31,532	-		GFF5407	0.88	+0.0
31,532	-		GFF5407	0.88	-0.1
31,532	-		GFF5407	0.88	+0.4
31,532	-		GFF5407	0.88	+0.3
31,532	-		GFF5407	0.88	+0.1
31,532	-		GFF5407	0.88	-1.1
31,532	-		GFF5407	0.88	-1.0
31,532	-		GFF5407	0.88	-1.0
31,532	-		GFF5407	0.88	-0.5
31,532	-		GFF5407	0.88	-0.6
31,532	-		GFF5407	0.88	-0.3
31,532	-		GFF5407	0.88	+2.3
31,532	-		GFF5407	0.88	-0.1
31,532	-		GFF5407	0.88	-0.9
31,800	+		GFF5408	0.20	-0.8
31,800	+		GFF5408	0.20	-0.1
31,800	+		GFF5408	0.20	-0.8
31,800	+		GFF5408	0.20	+0.6
31,800	+		GFF5408	0.20	-1.7
31,800	+		GFF5408	0.20	+0.1
31,800	+		GFF5408	0.20	-2.1
31,800	+		GFF5408	0.20	-3.1
31,801	-		GFF5408	0.20	-0.5
31,801	-		GFF5408	0.20	-0.1
31,801	-		GFF5408	0.20	-1.2
31,801	-		GFF5408	0.20	+0.2
31,801	-		GFF5408	0.20	-1.6
31,801	-		GFF5408	0.20	-0.8
32,061	+		GFF5408	0.52	-1.1
32,062	-		GFF5408	0.52	-1.8
32,062	-		GFF5408	0.52	+0.7
32,062	-		GFF5408	0.52	+0.2
32,256	+		GFF5408	0.76	+0.7
32,256	+		GFF5408	0.76	+0.5
32,256	+		GFF5408	0.76	+0.4
32,256	+		GFF5408	0.76	+1.7
32,256	+		GFF5408	0.76	-0.1
32,256	+		GFF5408	0.76	-1.8
32,256	+		GFF5408	0.76	-0.6
32,256	+		GFF5408	0.76	-1.2
32,256	+		GFF5408	0.76	-1.8
32,256	+		GFF5408	0.76	-0.0
32,256	+		GFF5408	0.76	-1.5
32,256	+		GFF5408	0.76	-0.2
32,256	+		GFF5408	0.76	+0.7
32,256	+		GFF5408	0.76	+0.1
32,256	+		GFF5408	0.76	-0.4
32,256	+		GFF5408	0.76	-0.8
32,256	+		GFF5408	0.76	-1.6
32,256	+		GFF5408	0.76	-0.4
32,256	+		GFF5408	0.76	-0.1
32,256	+		GFF5408	0.76	+1.7
32,256	+		GFF5408	0.76	-0.5
32,256	+		GFF5408	0.76	-0.7
32,257	-		GFF5408	0.76	-0.3
32,257	-		GFF5408	0.76	-0.3
32,257	-		GFF5408	0.76	-0.8
32,257	-		GFF5408	0.76	-0.8
32,257	-		GFF5408	0.76	-0.5
32,257	-		GFF5408	0.76	-0.2
32,257	-		GFF5408	0.76	-1.3
32,257	-		GFF5408	0.76	-1.6
32,257	-		GFF5408	0.76	-0.1
32,257	-		GFF5408	0.76	-0.4
32,257	-		GFF5408	0.76	-1.5
32,257	-		GFF5408	0.76	-0.5
32,257	-		GFF5408	0.76	-0.2
32,257	-		GFF5408	0.76	-0.3
32,257	-		GFF5408	0.76	-0.7
32,257	-		GFF5408	0.76	-0.8
32,257	-		GFF5408	0.76	-1.0
32,257	-		GFF5408	0.76	-1.1
32,257	-		GFF5408	0.76	-0.6
32,257	-		GFF5408	0.76	-1.9
32,257	-		GFF5408	0.76	-0.7
32,258	+		GFF5408	0.76	+1.0
32,258	+		GFF5408	0.76	-1.5
32,258	+		GFF5408	0.76	-0.4
32,258	+		GFF5408	0.76	-0.2
32,258	+		GFF5408	0.76	-1.1
32,258	+		GFF5408	0.76	+0.9
32,258	+		GFF5408	0.76	-1.4
32,258	+		GFF5408	0.76	+2.4
32,258	+		GFF5408	0.76	-0.7
32,258	+		GFF5408	0.76	-0.2
32,258	+		GFF5408	0.76	-1.1
32,258	+		GFF5408	0.76	+0.1
32,258	+		GFF5408	0.76	+0.2
32,258	+		GFF5408	0.76	+0.1
32,258	+		GFF5408	0.76	-0.9
32,258	+		GFF5408	0.76	+0.7
32,258	+		GFF5408	0.76	-0.8
32,258	+		GFF5408	0.76	+0.2
32,258	+		GFF5408	0.76	-1.0
32,259	-		GFF5408	0.76	-1.1
32,259	-		GFF5408	0.76	-0.3
32,259	-		GFF5408	0.76	+0.0
32,259	-		GFF5408	0.76	-1.9
32,259	-		GFF5408	0.76	-0.8
32,259	-		GFF5408	0.76	+0.1
32,259	-		GFF5408	0.76	-1.9
32,259	-		GFF5408	0.76	+0.1
32,259	-		GFF5408	0.76	-1.5
32,259	-		GFF5408	0.76	+0.2
32,259	-		GFF5408	0.76	-0.7
32,259	-		GFF5408	0.76	-0.9
32,259	-		GFF5408	0.76	-0.4
32,259	-		GFF5408	0.76	-1.8
32,259	-		GFF5408	0.76	-0.9
32,259	-		GFF5408	0.76	-1.3
32,259	-		GFF5408	0.76	-0.5
32,259	-		GFF5408	0.76	-0.7
32,317	+		GFF5408	0.83	-1.5
32,317	+		GFF5408	0.83	+0.2
32,317	+		GFF5408	0.83	-1.2
32,317	+		GFF5408	0.83	-1.2
32,317	+		GFF5408	0.83	-0.3
32,317	+		GFF5408	0.83	-1.6
32,318	-		GFF5408	0.84	-1.5
32,318	-		GFF5408	0.84	-0.4
32,393	+				-0.2
32,393	+				-0.2
32,393	+				+0.0
32,393	+				-2.3
32,393	+				-0.2
32,393	+				-1.2
32,394	-				-2.2
32,394	-				-1.5
32,394	-				+0.7
32,394	-				-0.9
32,394	-				+0.3
32,394	-				-0.5
32,394	-				-2.0
32,394	-				-1.6
32,394	-				-0.6
32,394	-				-0.6
32,394	-				-0.8
32,394	-				-0.5
32,394	-				-0.5
32,448	+				+0.2
32,448	+				-0.1
32,448	+				+0.6
32,448	+				-0.6
32,448	+				+1.6
32,448	+				+0.0
32,448	+				-0.4
32,448	+				-0.8
32,448	+				-0.9
32,448	+				-0.7
32,448	+				-0.5
32,448	+				-1.5
32,448	+				+0.1
32,448	+				+0.6
32,448	+				-0.2
32,449	-				-0.1
32,449	-				-0.6
32,449	-				-0.2
32,449	-				-0.0
32,449	-				-0.9
32,449	-				+0.5
32,449	-				-0.6
32,449	-				-1.5
32,449	-				-0.4
32,449	-				-0.6
32,449	-				+1.1
32,449	-				-1.2
32,449	-				-1.3
32,449	-				-0.3
32,604	+		GFF5409	0.13	-0.8
32,604	+		GFF5409	0.13	-0.8
32,604	+		GFF5409	0.13	-0.2
32,604	+		GFF5409	0.13	-0.1
32,605	-		GFF5409	0.14	+0.8