Strain Fitness in Variovorax sp. SCN45 around GFF5372

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5371 and GFF5372 are separated by 263 nucleotides GFF5371 - no description, at 245,582 to 246,469 GFF5371 GFF5372 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 246,733 to 248,073 GFF5372 Position (kb) 246 247 248 249Strain fitness (log2 ratio) -2 -1 0 1at 246.460 kb on + strandat 246.461 kb on - strandat 246.812 kb on + strandat 246.812 kb on + strandat 246.812 kb on + strandat 246.813 kb on - strandat 246.813 kb on - strandat 246.932 kb on + strand, within GFF5372at 246.932 kb on + strand, within GFF5372at 246.932 kb on + strand, within GFF5372at 246.933 kb on - strand, within GFF5372at 247.293 kb on - strand, within GFF5372at 247.293 kb on - strand, within GFF5372at 248.013 kb on - strandat 248.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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246,460 + -0.5
246,461 - +0.1
246,812 + -1.0
246,812 + -1.8
246,812 + -1.1
246,813 - -1.1
246,813 - -0.4
246,932 + GFF5372 0.15 +0.2
246,932 + GFF5372 0.15 -0.9
246,932 + GFF5372 0.15 -0.8
246,933 - GFF5372 0.15 -1.2
247,293 - GFF5372 0.42 -0.1
247,293 - GFF5372 0.42 +0.6
248,013 - -0.5
248,013 - +0.3

Or see this region's nucleotide sequence