Strain Fitness in Variovorax sp. SCN45 around GFF5287

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5286 and GFF5287 are separated by 1 nucleotidesGFF5287 and GFF5288 are separated by 13 nucleotides GFF5286 - Ferrichrome-iron receptor, at 154,842 to 157,322 GFF5286 GFF5287 - FIG00455092: hypothetical protein, at 157,324 to 158,043 GFF5287 GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672 GFF5288 Position (kb) 157 158 159Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 156.354 kb on + strand, within GFF5286at 156.355 kb on - strand, within GFF5286at 156.369 kb on + strand, within GFF5286at 156.369 kb on + strand, within GFF5286at 156.600 kb on + strand, within GFF5286at 156.600 kb on + strand, within GFF5286at 156.601 kb on - strand, within GFF5286at 156.601 kb on - strand, within GFF5286at 156.601 kb on - strand, within GFF5286at 156.601 kb on - strand, within GFF5286at 156.601 kb on - strand, within GFF5286at 156.601 kb on - strand, within GFF5286at 156.627 kb on + strand, within GFF5286at 156.627 kb on + strand, within GFF5286at 156.636 kb on + strand, within GFF5286at 156.636 kb on + strand, within GFF5286at 156.636 kb on + strand, within GFF5286at 156.636 kb on + strand, within GFF5286at 156.636 kb on + strand, within GFF5286at 156.636 kb on + strand, within GFF5286at 156.636 kb on + strand, within GFF5286at 156.637 kb on - strand, within GFF5286at 156.637 kb on - strand, within GFF5286at 156.637 kb on - strand, within GFF5286at 156.637 kb on - strand, within GFF5286at 156.637 kb on - strand, within GFF5286at 156.637 kb on - strand, within GFF5286at 156.688 kb on - strand, within GFF5286at 156.688 kb on - strand, within GFF5286at 156.936 kb on + strand, within GFF5286at 156.936 kb on + strand, within GFF5286at 156.936 kb on + strand, within GFF5286at 156.937 kb on - strand, within GFF5286at 156.937 kb on - strand, within GFF5286at 156.942 kb on + strand, within GFF5286at 156.942 kb on + strand, within GFF5286at 156.943 kb on - strand, within GFF5286at 156.943 kb on - strand, within GFF5286at 156.943 kb on - strand, within GFF5286at 156.975 kb on + strand, within GFF5286at 156.975 kb on + strand, within GFF5286at 156.975 kb on + strand, within GFF5286at 156.975 kb on + strand, within GFF5286at 157.032 kb on + strand, within GFF5286at 157.032 kb on + strand, within GFF5286at 157.033 kb on - strand, within GFF5286at 157.092 kb on + strandat 157.092 kb on + strandat 157.092 kb on + strandat 157.092 kb on + strandat 157.092 kb on + strandat 157.093 kb on - strandat 157.093 kb on - strandat 157.132 kb on + strandat 157.132 kb on + strandat 157.132 kb on + strandat 157.132 kb on + strandat 157.143 kb on + strandat 157.144 kb on - strandat 157.170 kb on + strandat 157.171 kb on - strandat 157.171 kb on - strandat 157.185 kb on + strandat 157.186 kb on - strandat 157.239 kb on + strandat 157.239 kb on + strandat 157.239 kb on + strandat 157.239 kb on + strandat 157.239 kb on + strandat 157.239 kb on + strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.240 kb on - strandat 157.242 kb on + strandat 157.242 kb on + strandat 157.263 kb on + strandat 157.263 kb on + strandat 157.263 kb on + strandat 157.264 kb on - strandat 157.264 kb on - strandat 157.264 kb on - strandat 157.264 kb on - strandat 157.320 kb on + strandat 157.321 kb on - strandat 157.321 kb on - strandat 157.729 kb on + strand, within GFF5287at 157.795 kb on + strand, within GFF5287at 157.795 kb on + strand, within GFF5287at 157.795 kb on + strand, within GFF5287at 157.795 kb on + strand, within GFF5287at 157.795 kb on + strand, within GFF5287at 157.795 kb on + strand, within GFF5287at 157.796 kb on - strand, within GFF5287at 157.861 kb on + strand, within GFF5287at 157.861 kb on + strand, within GFF5287at 157.861 kb on + strand, within GFF5287at 157.861 kb on + strand, within GFF5287at 157.861 kb on + strand, within GFF5287at 157.862 kb on - strand, within GFF5287at 157.862 kb on - strand, within GFF5287at 157.862 kb on - strand, within GFF5287at 157.918 kb on + strand, within GFF5287at 157.918 kb on + strand, within GFF5287at 157.918 kb on + strand, within GFF5287at 157.919 kb on - strand, within GFF5287at 157.919 kb on - strand, within GFF5287at 157.919 kb on - strand, within GFF5287at 157.919 kb on - strand, within GFF5287at 157.919 kb on - strand, within GFF5287at 158.378 kb on + strand, within GFF5288at 158.378 kb on + strand, within GFF5288at 158.390 kb on + strand, within GFF5288at 158.390 kb on + strand, within GFF5288at 158.391 kb on - strand, within GFF5288at 158.391 kb on - strand, within GFF5288at 158.543 kb on + strand, within GFF5288at 158.543 kb on + strand, within GFF5288at 158.544 kb on - strand, within GFF5288at 158.666 kb on + strand, within GFF5288at 158.666 kb on + strand, within GFF5288at 158.666 kb on + strand, within GFF5288at 158.666 kb on + strand, within GFF5288at 158.666 kb on + strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.667 kb on - strand, within GFF5288at 158.693 kb on + strand, within GFF5288at 158.693 kb on + strand, within GFF5288at 158.694 kb on - strand, within GFF5288at 158.694 kb on - strand, within GFF5288at 158.694 kb on - strand, within GFF5288

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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156,354 + GFF5286 0.61 +0.4
156,355 - GFF5286 0.61 -0.4
156,369 + GFF5286 0.62 -0.3
156,369 + GFF5286 0.62 +1.2
156,600 + GFF5286 0.71 +0.6
156,600 + GFF5286 0.71 +0.0
156,601 - GFF5286 0.71 -0.8
156,601 - GFF5286 0.71 -0.8
156,601 - GFF5286 0.71 -0.9
156,601 - GFF5286 0.71 -0.4
156,601 - GFF5286 0.71 -0.2
156,601 - GFF5286 0.71 +1.1
156,627 + GFF5286 0.72 -0.5
156,627 + GFF5286 0.72 +0.7
156,636 + GFF5286 0.72 -0.5
156,636 + GFF5286 0.72 -0.8
156,636 + GFF5286 0.72 +2.0
156,636 + GFF5286 0.72 -0.1
156,636 + GFF5286 0.72 -2.9
156,636 + GFF5286 0.72 +1.6
156,636 + GFF5286 0.72 +0.7
156,637 - GFF5286 0.72 -0.2
156,637 - GFF5286 0.72 -0.0
156,637 - GFF5286 0.72 -0.1
156,637 - GFF5286 0.72 +0.9
156,637 - GFF5286 0.72 -0.0
156,637 - GFF5286 0.72 -1.2
156,688 - GFF5286 0.74 -0.6
156,688 - GFF5286 0.74 -0.2
156,936 + GFF5286 0.84 +0.3
156,936 + GFF5286 0.84 +0.3
156,936 + GFF5286 0.84 +0.1
156,937 - GFF5286 0.84 -0.1
156,937 - GFF5286 0.84 -0.2
156,942 + GFF5286 0.85 -0.4
156,942 + GFF5286 0.85 +0.6
156,943 - GFF5286 0.85 +0.5
156,943 - GFF5286 0.85 -0.7
156,943 - GFF5286 0.85 -0.6
156,975 + GFF5286 0.86 -1.0
156,975 + GFF5286 0.86 +0.2
156,975 + GFF5286 0.86 -1.0
156,975 + GFF5286 0.86 -0.2
157,032 + GFF5286 0.88 -0.4
157,032 + GFF5286 0.88 -2.2
157,033 - GFF5286 0.88 -0.6
157,092 + +0.2
157,092 + +0.8
157,092 + +0.2
157,092 + +0.0
157,092 + -0.3
157,093 - +0.6
157,093 - -0.5
157,132 + -0.9
157,132 + -0.9
157,132 + -0.9
157,132 + -0.5
157,143 + -0.9
157,144 - +0.4
157,170 + -0.2
157,171 - +0.6
157,171 - -0.2
157,185 + -1.0
157,186 - +0.6
157,239 + -1.4
157,239 + -0.7
157,239 + +0.2
157,239 + -0.8
157,239 + -0.0
157,239 + -0.3
157,240 - +1.0
157,240 - -0.2
157,240 - +0.6
157,240 - -0.9
157,240 - +1.0
157,240 - +0.1
157,240 - +0.1
157,240 - -0.2
157,240 - -0.2
157,240 - +0.1
157,240 - -0.0
157,240 - -0.2
157,240 - +0.1
157,242 + -0.7
157,242 + +1.6
157,263 + -0.9
157,263 + -0.5
157,263 + -1.1
157,264 - +0.5
157,264 - -1.8
157,264 - +0.4
157,264 - -0.4
157,320 + +0.9
157,321 - +0.2
157,321 - +0.2
157,729 + GFF5287 0.56 -0.4
157,795 + GFF5287 0.65 -0.1
157,795 + GFF5287 0.65 -0.5
157,795 + GFF5287 0.65 -0.5
157,795 + GFF5287 0.65 -0.7
157,795 + GFF5287 0.65 -0.2
157,795 + GFF5287 0.65 -0.6
157,796 - GFF5287 0.66 +0.1
157,861 + GFF5287 0.75 -1.2
157,861 + GFF5287 0.75 -0.0
157,861 + GFF5287 0.75 +0.6
157,861 + GFF5287 0.75 +0.5
157,861 + GFF5287 0.75 -0.0
157,862 - GFF5287 0.75 -1.3
157,862 - GFF5287 0.75 -0.8
157,862 - GFF5287 0.75 -2.1
157,918 + GFF5287 0.82 +0.2
157,918 + GFF5287 0.82 -1.7
157,918 + GFF5287 0.82 +0.3
157,919 - GFF5287 0.83 -0.4
157,919 - GFF5287 0.83 -0.7
157,919 - GFF5287 0.83 -0.5
157,919 - GFF5287 0.83 -0.7
157,919 - GFF5287 0.83 -1.1
158,378 + GFF5288 0.12 -1.1
158,378 + GFF5288 0.12 +0.2
158,390 + GFF5288 0.13 -0.3
158,390 + GFF5288 0.13 -1.2
158,391 - GFF5288 0.13 +0.2
158,391 - GFF5288 0.13 -0.1
158,543 + GFF5288 0.19 +0.6
158,543 + GFF5288 0.19 -0.2
158,544 - GFF5288 0.19 -0.7
158,666 + GFF5288 0.23 +0.5
158,666 + GFF5288 0.23 +0.2
158,666 + GFF5288 0.23 +0.0
158,666 + GFF5288 0.23 -0.1
158,666 + GFF5288 0.23 -1.7
158,667 - GFF5288 0.23 -0.9
158,667 - GFF5288 0.23 +0.0
158,667 - GFF5288 0.23 -0.2
158,667 - GFF5288 0.23 -1.1
158,667 - GFF5288 0.23 -0.3
158,667 - GFF5288 0.23 +1.6
158,667 - GFF5288 0.23 +0.0
158,667 - GFF5288 0.23 -0.4
158,667 - GFF5288 0.23 +0.4
158,667 - GFF5288 0.23 +0.4
158,667 - GFF5288 0.23 -1.1
158,667 - GFF5288 0.23 +0.0
158,667 - GFF5288 0.23 -0.2
158,667 - GFF5288 0.23 -0.4
158,667 - GFF5288 0.23 -1.1
158,667 - GFF5288 0.23 -0.3
158,693 + GFF5288 0.24 -0.3
158,693 + GFF5288 0.24 -0.7
158,694 - GFF5288 0.24 -0.3
158,694 - GFF5288 0.24 -0.9
158,694 - GFF5288 0.24 +0.2

Or see this region's nucleotide sequence