Strain Fitness in Variovorax sp. SCN45 around GFF5247

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
109,940	-		GFF5246	0.43	-1.3
109,940	-		GFF5246	0.43	+1.0
110,050	+		GFF5246	0.50	+0.5
110,051	-		GFF5246	0.50	-0.7
110,051	-		GFF5246	0.50	-0.5
110,051	-		GFF5246	0.50	-0.4
110,205	+		GFF5246	0.60	+0.0
110,205	+		GFF5246	0.60	-0.3
110,206	-		GFF5246	0.60	-0.7
110,239	+		GFF5246	0.62	-0.3
110,239	+		GFF5246	0.62	-0.3
110,239	+		GFF5246	0.62	-1.0
110,239	+		GFF5246	0.62	-0.1
110,239	+		GFF5246	0.62	-0.5
110,239	+		GFF5246	0.62	+0.8
110,239	+		GFF5246	0.62	-2.0
110,240	-		GFF5246	0.62	-0.8
110,240	-		GFF5246	0.62	-1.0
110,240	-		GFF5246	0.62	-0.2
110,240	-		GFF5246	0.62	-0.9
110,240	-		GFF5246	0.62	+0.7
110,240	-		GFF5246	0.62	-1.4
110,240	-		GFF5246	0.62	+0.0
110,247	+		GFF5246	0.63	+0.9
110,422	+		GFF5246	0.74	-1.4
110,422	+		GFF5246	0.74	+0.3
110,423	-		GFF5246	0.74	-1.2
110,423	-		GFF5246	0.74	-0.9
110,423	-		GFF5246	0.74	+0.9
110,423	-		GFF5246	0.74	-1.8
110,423	-		GFF5246	0.74	-0.7
110,423	-		GFF5246	0.74	+0.6
110,434	+		GFF5246	0.75	+0.6
110,434	+		GFF5246	0.75	+1.1
110,434	+		GFF5246	0.75	-0.7
110,434	+		GFF5246	0.75	-0.2
110,435	-		GFF5246	0.75	-1.3
110,435	-		GFF5246	0.75	-0.8
110,435	-		GFF5246	0.75	+1.1
110,636	+		GFF5246	0.87	-0.6
110,636	+		GFF5246	0.87	-0.8
110,636	+		GFF5246	0.87	-0.3
110,637	-		GFF5246	0.87	-1.2
110,637	-		GFF5246	0.87	+0.0
110,637	-		GFF5246	0.87	-1.0
110,638	+		GFF5246	0.88	+1.2
110,638	+		GFF5246	0.88	-0.7
110,638	+		GFF5246	0.88	-0.7
110,639	-		GFF5246	0.88	+0.2
110,639	-		GFF5246	0.88	-2.0
110,639	-		GFF5246	0.88	+0.2
110,639	-		GFF5246	0.88	+0.6
110,639	-		GFF5246	0.88	-1.0
110,761	+				-1.4
110,761	+				-0.6
110,762	-				-1.1
110,762	-				-0.3
110,779	-				+0.0
110,791	+				-0.4
110,792	-				-0.7
110,817	-				-1.2
110,863	+				+0.9
110,863	+				-0.1
110,863	+				-1.1
110,863	+				-0.5
110,864	-				+0.1
110,876	+				+0.0
110,877	-				-0.3
110,877	-				-0.5
110,877	-				+0.1
110,877	-				+0.2
110,903	+				-0.7
110,904	-				+0.3
110,904	-				-0.7
110,904	-				-0.3
110,904	-				+0.6
110,982	-				+0.3
111,013	+				-1.8
111,013	+				-2.6
111,014	-				+0.0
111,014	-				+0.8
111,034	-		GFF5247	0.11	+0.0
111,241	+		GFF5247	0.29	-0.7
111,242	-		GFF5247	0.29	-0.8
111,242	-		GFF5247	0.29	-1.0
111,242	-		GFF5247	0.29	-0.9
111,263	+		GFF5247	0.31	-0.3
111,263	+		GFF5247	0.31	-1.0
111,263	+		GFF5247	0.31	-0.7
111,386	+		GFF5247	0.42	-0.1
111,387	-		GFF5247	0.42	-0.8
111,519	+		GFF5247	0.54	+0.6
111,519	+		GFF5247	0.54	+0.6
111,520	-		GFF5247	0.54	+0.7
111,533	-		GFF5247	0.55	-0.4
111,608	+		GFF5247	0.62	-1.3
111,608	+		GFF5247	0.62	+0.4
111,608	+		GFF5247	0.62	+0.3
111,608	+		GFF5247	0.62	+1.4
111,609	-		GFF5247	0.62	-1.4
111,609	-		GFF5247	0.62	-0.1
111,609	-		GFF5247	0.62	+0.6
111,609	-		GFF5247	0.62	+0.1
111,683	+		GFF5247	0.68	-0.6
111,684	-		GFF5247	0.69	-0.6
111,684	-		GFF5247	0.69	-1.4
111,684	-		GFF5247	0.69	+1.2
111,684	-		GFF5247	0.69	-1.0
111,684	-		GFF5247	0.69	-0.7
111,719	+		GFF5247	0.72	-0.2
111,737	+		GFF5247	0.73	-1.1
111,737	+		GFF5247	0.73	+0.8
111,737	+		GFF5247	0.73	-1.2
111,737	+		GFF5247	0.73	+1.2
111,737	+		GFF5247	0.73	-0.3
111,737	+		GFF5247	0.73	-0.9
111,737	+		GFF5247	0.73	-0.1
111,737	+		GFF5247	0.73	-1.0
111,737	+		GFF5247	0.73	-1.2
111,737	+		GFF5247	0.73	+0.2
111,737	+		GFF5247	0.73	-0.5
111,737	+		GFF5247	0.73	-0.2
111,737	+		GFF5247	0.73	-0.4
111,738	-		GFF5247	0.73	-0.0
111,738	-		GFF5247	0.73	-0.6
111,738	-		GFF5247	0.73	-0.2
111,738	-		GFF5247	0.73	-1.2
111,738	-		GFF5247	0.73	-0.1
111,860	+		GFF5247	0.84	-0.8
111,860	+		GFF5247	0.84	-0.7
111,861	-		GFF5247	0.84	-1.2
111,861	-		GFF5247	0.84	-0.5
111,875	-		GFF5247	0.85	-0.7
111,899	+		GFF5247	0.88	+0.3
111,900	-		GFF5247	0.88	+0.0
111,900	-		GFF5247	0.88	-0.0
111,971	+				-0.7
111,972	-				+1.6
111,972	-				+1.0
111,972	-				+0.4
111,972	-				+0.3
111,972	-				-1.0
111,972	-				+0.2
112,222	+				+0.0
112,222	+				-2.1
112,223	-				-0.8
112,223	-				-1.2
112,223	-				-1.0
112,223	-				-0.0
112,288	+		GFF5248	0.12	+0.6
112,288	+		GFF5248	0.12	-0.5
112,322	-		GFF5248	0.15	-0.3
112,322	-		GFF5248	0.15	-0.3
112,322	-		GFF5248	0.15	-0.5
112,358	+		GFF5248	0.18	+2.6
112,375	+		GFF5248	0.19	-0.2
112,376	-		GFF5248	0.19	+2.2
112,399	+		GFF5248	0.21	+0.4
112,399	+		GFF5248	0.21	-0.5
112,399	+		GFF5248	0.21	+0.8
112,399	+		GFF5248	0.21	+0.1
112,414	+		GFF5248	0.22	+0.6
112,415	-		GFF5248	0.23	-0.2
112,577	-		GFF5248	0.36	+1.3
112,577	-		GFF5248	0.36	-0.4
112,655	-		GFF5248	0.43	-2.1
112,708	+		GFF5248	0.47	+0.1
112,708	+		GFF5248	0.47	+1.6
112,708	+		GFF5248	0.47	-1.0
112,708	+		GFF5248	0.47	-0.6
112,708	+		GFF5248	0.47	+2.6
112,709	-		GFF5248	0.47	-0.4
112,709	-		GFF5248	0.47	-0.1
112,709	-		GFF5248	0.47	-1.2
112,709	-		GFF5248	0.47	-0.5
112,768	+		GFF5248	0.52	+0.6
112,768	+		GFF5248	0.52	-0.2
112,768	+		GFF5248	0.52	-0.1
112,768	+		GFF5248	0.52	+0.2
112,769	-		GFF5248	0.52	+0.8
112,769	-		GFF5248	0.52	-0.0
112,769	-		GFF5248	0.52	-0.7
112,769	-		GFF5248	0.52	-1.3
112,793	-		GFF5248	0.54	-0.8
112,793	-		GFF5248	0.54	-0.5
112,793	-		GFF5248	0.54	+0.0
112,793	-		GFF5248	0.54	+0.0
112,808	-		GFF5248	0.56	-0.4
112,808	-		GFF5248	0.56	+1.4
112,808	-		GFF5248	0.56	-0.4
112,837	+		GFF5248	0.58	+0.6
112,837	+		GFF5248	0.58	-0.4
112,837	+		GFF5248	0.58	-1.4
112,837	+		GFF5248	0.58	-1.0
112,864	+		GFF5248	0.60	-0.1
112,864	+		GFF5248	0.60	-1.8
112,864	+		GFF5248	0.60	+0.5
112,864	+		GFF5248	0.60	-0.8
112,864	+		GFF5248	0.60	+0.8
112,864	+		GFF5248	0.60	-1.2
112,864	+		GFF5248	0.60	+0.2
112,865	-		GFF5248	0.61	+0.2
112,865	-		GFF5248	0.61	-0.4
112,865	-		GFF5248	0.61	+0.4
112,865	-		GFF5248	0.61	-0.6
112,921	+		GFF5248	0.65	-1.4
112,921	+		GFF5248	0.65	-0.8
112,921	+		GFF5248	0.65	-1.2
112,921	+		GFF5248	0.65	-0.8
112,921	+		GFF5248	0.65	-0.4
112,921	+		GFF5248	0.65	-0.3
112,921	+		GFF5248	0.65	+0.4
112,921	+		GFF5248	0.65	-1.1
112,921	+		GFF5248	0.65	+0.4
112,921	+		GFF5248	0.65	+0.0
112,921	+		GFF5248	0.65	+1.3
112,921	+		GFF5248	0.65	-0.2
112,922	-		GFF5248	0.65	-0.1
112,922	-		GFF5248	0.65	-0.5
112,922	-		GFF5248	0.65	+0.3
112,922	-		GFF5248	0.65	+0.1
112,922	-		GFF5248	0.65	-0.3
112,922	-		GFF5248	0.65	-0.6
113,008	+		GFF5248	0.73	+0.0
113,008	+		GFF5248	0.73	+0.6