Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5228 and GFF5229 are separated by 176 nucleotides GFF5229 and GFF5230 overlap by 14 nucleotides
GFF5228 - Arachidonate 15-lipoxygenase precursor (EC 1.13.11.33), at 90,850 to 92,859
GFF5228
GFF5229 - Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3), at 93,036 to 94,478
GFF5229
GFF5230 - Xanthine-uracil permease, at 94,465 to 95,880
GFF5230
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2 at 92.051 kb on + strand, within GFF5228 at 92.063 kb on + strand, within GFF5228 at 92.124 kb on - strand, within GFF5228 at 92.173 kb on + strand, within GFF5228 at 92.208 kb on - strand, within GFF5228 at 92.254 kb on - strand, within GFF5228 at 92.681 kb on + strand at 92.681 kb on + strand at 92.681 kb on + strand at 92.681 kb on + strand at 92.681 kb on + strand at 92.682 kb on - strand at 92.934 kb on + strand at 93.067 kb on + strand at 93.068 kb on - strand at 93.068 kb on - strand at 94.027 kb on + strand, within GFF5229 at 94.027 kb on + strand, within GFF5229 at 94.028 kb on - strand, within GFF5229 at 94.028 kb on - strand, within GFF5229 at 94.133 kb on - strand, within GFF5229 at 94.201 kb on + strand, within GFF5229 at 94.201 kb on + strand, within GFF5229 at 94.201 kb on + strand, within GFF5229 at 94.202 kb on - strand, within GFF5229 at 94.202 kb on - strand, within GFF5229 at 94.347 kb on + strand at 94.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 92,051 + GFF5228 0.60 -0.3 92,063 + GFF5228 0.60 -0.4 92,124 - GFF5228 0.63 +0.3 92,173 + GFF5228 0.66 +0.6 92,208 - GFF5228 0.68 +0.9 92,254 - GFF5228 0.70 +0.2 92,681 + +0.4 92,681 + -0.4 92,681 + -0.8 92,681 + -0.1 92,681 + +0.6 92,682 - -1.2 92,934 + +0.3 93,067 + -2.3 93,068 - +0.0 93,068 - -0.6 94,027 + GFF5229 0.69 +2.3 94,027 + GFF5229 0.69 -0.3 94,028 - GFF5229 0.69 -0.4 94,028 - GFF5229 0.69 -0.2 94,133 - GFF5229 0.76 +0.7 94,201 + GFF5229 0.81 -1.6 94,201 + GFF5229 0.81 -0.3 94,201 + GFF5229 0.81 +0.3 94,202 - GFF5229 0.81 -0.3 94,202 - GFF5229 0.81 +0.7 94,347 + -1.2 94,347 + -0.1
Or see this region's nucleotide sequence