Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5197 and GFF5198 are separated by 139 nucleotides GFF5198 and GFF5199 overlap by 4 nucleotides
GFF5197 - Galactofuranose ABC transporter, ATP-binding protein, at 56,536 to 58,050
GFF5197
GFF5198 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 58,190 to 59,224
GFF5198
GFF5199 - Galactofuranose ABC transporter, permease protein 2, at 59,221 to 60,258
GFF5199
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.191 kb on + strand, within GFF5197 at 58.027 kb on + strand at 58.028 kb on - strand at 58.028 kb on - strand at 58.028 kb on - strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.190 kb on - strand at 58.190 kb on - strand at 58.190 kb on - strand at 58.431 kb on + strand, within GFF5198 at 58.670 kb on + strand, within GFF5198 at 58.671 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.871 kb on + strand, within GFF5198 at 58.872 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.178 kb on + strand at 59.179 kb on - strand at 59.179 kb on - strand at 59.314 kb on + strand at 59.695 kb on + strand, within GFF5199 at 59.696 kb on - strand, within GFF5199 at 59.870 kb on - strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.993 kb on - strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.091 kb on + strand, within GFF5199
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 57,191 + GFF5197 0.43 -0.2 58,027 + -0.0 58,028 - -0.5 58,028 - -0.3 58,028 - -0.4 58,189 + +0.9 58,189 + -0.1 58,189 + +0.2 58,189 + -0.1 58,190 - -0.8 58,190 - -1.8 58,190 - +1.6 58,431 + GFF5198 0.23 +0.3 58,670 + GFF5198 0.46 -0.0 58,671 - GFF5198 0.46 -0.2 58,674 - GFF5198 0.47 +0.5 58,674 - GFF5198 0.47 +1.9 58,674 - GFF5198 0.47 -0.1 58,871 + GFF5198 0.66 +0.1 58,872 - GFF5198 0.66 +1.6 59,073 - GFF5198 0.85 -0.1 59,073 - GFF5198 0.85 +0.0 59,073 - GFF5198 0.85 +0.3 59,178 + -0.3 59,179 - -0.4 59,179 - +0.6 59,314 + -0.5 59,695 + GFF5199 0.46 -0.1 59,696 - GFF5199 0.46 -1.1 59,870 - GFF5199 0.63 -1.1 59,992 + GFF5199 0.74 -0.2 59,992 + GFF5199 0.74 +0.3 59,992 + GFF5199 0.74 +0.6 59,992 + GFF5199 0.74 -1.0 59,993 - GFF5199 0.74 -1.3 60,091 + GFF5199 0.84 +0.0 60,091 + GFF5199 0.84 -0.6
Or see this region's nucleotide sequence