Strain Fitness in Variovorax sp. SCN45 around GFF517

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF515 and GFF516 are separated by 144 nucleotidesGFF516 and GFF517 overlap by 4 nucleotidesGFF517 and GFF518 are separated by 56 nucleotides GFF515 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 554,973 to 556,160 GFF515 GFF516 - hypothetical protein, at 556,305 to 556,580 GFF516 GFF517 - no description, at 556,577 to 556,915 GFF517 GFF518 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 556,972 to 558,504 GFF518 Position (kb) 556 557Strain fitness (log2 ratio) -2 -1 0 1 2at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.887 kb on - strand, within GFF515at 555.991 kb on + strand, within GFF515at 555.991 kb on + strand, within GFF515at 555.992 kb on - strand, within GFF515at 556.034 kb on - strand, within GFF515at 556.034 kb on - strand, within GFF515at 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.071 kb on + strandat 556.072 kb on - strandat 556.213 kb on + strandat 556.214 kb on - strandat 556.224 kb on + strandat 556.225 kb on - strandat 556.306 kb on + strandat 556.306 kb on + strandat 556.307 kb on - strandat 556.310 kb on + strandat 556.311 kb on - strandat 556.311 kb on - strandat 556.311 kb on - strandat 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.639 kb on - strand, within GFF517at 556.639 kb on - strand, within GFF517at 556.639 kb on - strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.660 kb on - strand, within GFF517at 556.660 kb on - strand, within GFF517at 556.660 kb on - strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.676 kb on - strand, within GFF517at 556.676 kb on - strand, within GFF517at 556.953 kb on - strandat 556.953 kb on - strandat 556.953 kb on - strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.462 kb on + strand, within GFF518at 557.462 kb on + strand, within GFF518at 557.462 kb on + strand, within GFF518at 557.463 kb on - strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.466 kb on - strand, within GFF518at 557.466 kb on - strand, within GFF518

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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555,739 + GFF515 0.64 +0.2
555,739 + GFF515 0.64 -0.3
555,739 + GFF515 0.64 -0.7
555,739 + GFF515 0.64 +0.2
555,739 + GFF515 0.64 -0.8
555,739 + GFF515 0.64 -0.1
555,739 + GFF515 0.64 +0.7
555,739 + GFF515 0.64 -0.8
555,739 + GFF515 0.64 +0.5
555,739 + GFF515 0.64 -0.1
555,739 + GFF515 0.64 +0.5
555,739 + GFF515 0.64 -1.1
555,739 + GFF515 0.64 +0.1
555,740 - GFF515 0.65 +0.7
555,740 - GFF515 0.65 -1.4
555,740 - GFF515 0.65 +2.5
555,740 - GFF515 0.65 +0.9
555,740 - GFF515 0.65 -0.3
555,740 - GFF515 0.65 +1.5
555,740 - GFF515 0.65 -0.5
555,740 - GFF515 0.65 +0.5
555,740 - GFF515 0.65 +0.3
555,740 - GFF515 0.65 +0.4
555,740 - GFF515 0.65 +0.6
555,740 - GFF515 0.65 -0.2
555,740 - GFF515 0.65 -0.5
555,740 - GFF515 0.65 +0.0
555,740 - GFF515 0.65 +1.2
555,740 - GFF515 0.65 +0.1
555,740 - GFF515 0.65 +2.0
555,805 + GFF515 0.70 -0.6
555,805 + GFF515 0.70 -0.0
555,805 + GFF515 0.70 -1.5
555,805 + GFF515 0.70 -0.5
555,805 + GFF515 0.70 +0.5
555,805 + GFF515 0.70 +0.8
555,805 + GFF515 0.70 -0.2
555,806 - GFF515 0.70 +1.7
555,806 - GFF515 0.70 -0.8
555,806 - GFF515 0.70 -1.0
555,806 - GFF515 0.70 -0.3
555,806 - GFF515 0.70 -0.4
555,806 - GFF515 0.70 +0.3
555,806 - GFF515 0.70 -0.0
555,806 - GFF515 0.70 +1.0
555,887 - GFF515 0.77 -0.3
555,991 + GFF515 0.86 +2.5
555,991 + GFF515 0.86 +0.0
555,992 - GFF515 0.86 -0.4
556,034 - GFF515 0.89 +0.2
556,034 - GFF515 0.89 -0.6
556,060 + -0.5
556,060 + +0.4
556,060 + +0.1
556,060 + +0.5
556,060 + +0.4
556,060 + +0.1
556,060 + +0.4
556,060 + -0.8
556,060 + -0.9
556,060 + +0.3
556,061 - +0.3
556,061 - +1.0
556,061 - +0.9
556,061 - +0.5
556,061 - +0.3
556,061 - +0.4
556,061 - -0.1
556,061 - +1.8
556,061 - +0.1
556,061 - -0.7
556,061 - +0.7
556,071 + +0.7
556,072 - +0.0
556,213 + -1.0
556,214 - -0.3
556,224 + +0.4
556,225 - -0.5
556,306 + -0.8
556,306 + +0.6
556,307 - -0.6
556,310 + -0.7
556,311 - +0.5
556,311 - -0.3
556,311 - -0.4
556,638 + GFF517 0.18 +0.3
556,638 + GFF517 0.18 +0.1
556,638 + GFF517 0.18 +0.1
556,638 + GFF517 0.18 +0.5
556,638 + GFF517 0.18 -0.7
556,638 + GFF517 0.18 +0.4
556,638 + GFF517 0.18 -0.7
556,638 + GFF517 0.18 -1.4
556,638 + GFF517 0.18 -0.2
556,638 + GFF517 0.18 +0.5
556,639 - GFF517 0.18 +0.5
556,639 - GFF517 0.18 +1.0
556,639 - GFF517 0.18 -1.4
556,641 + GFF517 0.19 -1.1
556,641 + GFF517 0.19 -0.5
556,641 + GFF517 0.19 +1.3
556,641 + GFF517 0.19 +1.3
556,641 + GFF517 0.19 -0.7
556,641 + GFF517 0.19 +0.0
556,641 + GFF517 0.19 +0.5
556,641 + GFF517 0.19 +0.2
556,641 + GFF517 0.19 +0.0
556,641 + GFF517 0.19 +0.1
556,641 + GFF517 0.19 -1.0
556,641 + GFF517 0.19 +1.0
556,642 - GFF517 0.19 +0.9
556,642 - GFF517 0.19 -0.8
556,642 - GFF517 0.19 +0.8
556,642 - GFF517 0.19 +1.1
556,642 - GFF517 0.19 -1.9
556,642 - GFF517 0.19 +0.1
556,642 - GFF517 0.19 +0.3
556,642 - GFF517 0.19 +0.4
556,642 - GFF517 0.19 -0.1
556,642 - GFF517 0.19 +0.1
556,642 - GFF517 0.19 +0.2
556,642 - GFF517 0.19 +0.5
556,642 - GFF517 0.19 -1.8
556,642 - GFF517 0.19 -0.9
556,642 - GFF517 0.19 -0.3
556,642 - GFF517 0.19 +0.2
556,642 - GFF517 0.19 +0.6
556,659 + GFF517 0.24 +0.2
556,659 + GFF517 0.24 -0.6
556,659 + GFF517 0.24 -0.0
556,659 + GFF517 0.24 -0.6
556,659 + GFF517 0.24 -1.4
556,660 - GFF517 0.24 -0.3
556,660 - GFF517 0.24 +0.8
556,660 - GFF517 0.24 +0.5
556,671 + GFF517 0.28 -1.1
556,671 + GFF517 0.28 -0.2
556,671 + GFF517 0.28 +0.0
556,671 + GFF517 0.28 +0.1
556,671 + GFF517 0.28 -0.8
556,671 + GFF517 0.28 +0.1
556,671 + GFF517 0.28 +0.3
556,672 - GFF517 0.28 -0.9
556,672 - GFF517 0.28 -1.0
556,672 - GFF517 0.28 -0.5
556,672 - GFF517 0.28 -0.3
556,672 - GFF517 0.28 +1.1
556,672 - GFF517 0.28 -1.6
556,672 - GFF517 0.28 -0.5
556,675 + GFF517 0.29 -0.9
556,675 + GFF517 0.29 -0.4
556,675 + GFF517 0.29 -0.2
556,675 + GFF517 0.29 +0.5
556,675 + GFF517 0.29 -0.0
556,675 + GFF517 0.29 +0.8
556,676 - GFF517 0.29 -0.1
556,676 - GFF517 0.29 -0.5
556,953 - -1.9
556,953 - -0.4
556,953 - -2.6
557,000 + -0.8
557,000 + +0.2
557,000 + -0.0
557,000 + -0.1
557,000 + +0.3
557,000 + +0.1
557,000 + +0.5
557,000 + -0.5
557,000 + -0.1
557,001 - -1.1
557,001 - +0.1
557,001 - +1.3
557,001 - +0.5
557,001 - -0.0
557,001 - -0.5
557,001 - +0.0
557,001 - +0.3
557,001 - -0.0
557,001 - +0.6
557,001 - +0.1
557,001 - +1.3
557,462 + GFF518 0.32 -0.1
557,462 + GFF518 0.32 +0.2
557,462 + GFF518 0.32 -1.7
557,463 - GFF518 0.32 +0.3
557,465 + GFF518 0.32 +0.5
557,465 + GFF518 0.32 +1.0
557,465 + GFF518 0.32 -0.1
557,465 + GFF518 0.32 +0.2
557,465 + GFF518 0.32 -0.1
557,465 + GFF518 0.32 -1.1
557,465 + GFF518 0.32 -0.3
557,465 + GFF518 0.32 -0.3
557,465 + GFF518 0.32 +0.4
557,465 + GFF518 0.32 +0.5
557,466 - GFF518 0.32 -0.1
557,466 - GFF518 0.32 -0.4

Or see this region's nucleotide sequence