Strain Fitness in Variovorax sp. SCN45 around GFF5038

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5037 and GFF5038 are separated by 4 nucleotidesGFF5038 and GFF5039 overlap by 4 nucleotidesGFF5039 and GFF5040 are separated by 331 nucleotides GFF5037 - ABC transporter spermidine/putrescine-binding protein, at 137,484 to 138,536 GFF5037 GFF5038 - Tetracycline resistance, MFS efflux pump => Tet(C), at 138,541 to 139,773 GFF5038 GFF5039 - no description, at 139,770 to 140,144 GFF5039 GFF5040 - 3-hydroxypropionate dehydrogenase DddA, flavin-containing (EC 1.1.1.59), at 140,476 to 142,107 GFF5040 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.649 kb on + strand, within GFF5037at 137.650 kb on - strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.232 kb on - strand, within GFF5037at 138.366 kb on + strand, within GFF5037at 138.367 kb on - strand, within GFF5037at 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.527 kb on - strandat 138.527 kb on - strandat 138.599 kb on + strandat 138.599 kb on + strandat 138.600 kb on - strandat 138.600 kb on - strandat 138.656 kb on + strandat 138.656 kb on + strandat 138.656 kb on + strandat 138.657 kb on - strandat 138.860 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.026 kb on - strand, within GFF5038at 139.268 kb on + strand, within GFF5038at 139.268 kb on + strand, within GFF5038at 139.583 kb on + strand, within GFF5038at 139.583 kb on + strand, within GFF5038at 139.583 kb on + strand, within GFF5038at 139.584 kb on - strand, within GFF5038at 139.754 kb on + strandat 139.754 kb on + strandat 139.754 kb on + strandat 139.754 kb on + strandat 139.754 kb on + strandat 139.755 kb on - strandat 139.755 kb on - strandat 139.755 kb on - strandat 139.755 kb on - strandat 139.755 kb on - strandat 139.755 kb on - strandat 139.755 kb on - strandat 139.813 kb on + strand, within GFF5039at 139.813 kb on + strand, within GFF5039at 139.813 kb on + strand, within GFF5039at 139.813 kb on + strand, within GFF5039at 139.813 kb on + strand, within GFF5039at 139.968 kb on + strand, within GFF5039at 139.968 kb on + strand, within GFF5039at 140.263 kb on - strandat 140.263 kb on - strandat 140.379 kb on + strandat 140.380 kb on - strandat 140.477 kb on + strandat 140.477 kb on + strandat 140.477 kb on + strandat 140.477 kb on + strandat 140.478 kb on - strandat 140.478 kb on - strandat 140.532 kb on + strandat 140.532 kb on + strandat 140.532 kb on + strandat 140.533 kb on - strandat 140.735 kb on + strand, within GFF5040at 140.735 kb on + strand, within GFF5040at 140.736 kb on - strand, within GFF5040at 140.768 kb on + strand, within GFF5040at 140.769 kb on - strand, within GFF5040

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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137,577 + -0.3
137,577 + -0.7
137,577 + +0.3
137,577 + -1.1
137,577 + +0.4
137,577 + +0.4
137,577 + -0.5
137,577 + +0.6
137,577 + -0.6
137,577 + -1.6
137,577 + -0.5
137,577 + -0.7
137,577 + -0.3
137,577 + -0.6
137,578 - -0.4
137,578 - -0.3
137,578 - +2.3
137,578 - +0.0
137,578 - +0.2
137,613 + GFF5037 0.12 -0.5
137,613 + GFF5037 0.12 +0.8
137,613 + GFF5037 0.12 -1.1
137,613 + GFF5037 0.12 +1.3
137,614 - GFF5037 0.12 -0.1
137,614 - GFF5037 0.12 +0.7
137,622 + GFF5037 0.13 -1.3
137,622 + GFF5037 0.13 +0.4
137,622 + GFF5037 0.13 -0.2
137,622 + GFF5037 0.13 -0.2
137,622 + GFF5037 0.13 -1.9
137,622 + GFF5037 0.13 -1.5
137,622 + GFF5037 0.13 -0.4
137,622 + GFF5037 0.13 -0.6
137,622 + GFF5037 0.13 -1.3
137,623 - GFF5037 0.13 +0.3
137,623 - GFF5037 0.13 +0.7
137,623 - GFF5037 0.13 -0.3
137,623 - GFF5037 0.13 -0.8
137,623 - GFF5037 0.13 +0.6
137,623 - GFF5037 0.13 +0.7
137,623 - GFF5037 0.13 -1.2
137,623 - GFF5037 0.13 -0.5
137,623 - GFF5037 0.13 -0.4
137,623 - GFF5037 0.13 -0.4
137,649 + GFF5037 0.16 -0.5
137,650 - GFF5037 0.16 -1.5
137,826 + GFF5037 0.32 -0.2
137,826 + GFF5037 0.32 +0.8
137,827 - GFF5037 0.33 +0.0
137,827 - GFF5037 0.33 -0.5
137,892 + GFF5037 0.39 +0.8
137,892 + GFF5037 0.39 -0.1
137,892 + GFF5037 0.39 -0.1
137,893 - GFF5037 0.39 -1.5
137,893 - GFF5037 0.39 +0.1
137,893 - GFF5037 0.39 -0.3
137,893 - GFF5037 0.39 +0.6
137,893 - GFF5037 0.39 -2.6
137,964 + GFF5037 0.46 -0.0
137,964 + GFF5037 0.46 -0.8
137,964 + GFF5037 0.46 -1.5
137,964 + GFF5037 0.46 +0.9
137,964 + GFF5037 0.46 -1.3
137,964 + GFF5037 0.46 -0.0
137,964 + GFF5037 0.46 +0.1
137,964 + GFF5037 0.46 +0.0
137,964 + GFF5037 0.46 -0.1
137,964 + GFF5037 0.46 -0.1
137,964 + GFF5037 0.46 -0.0
137,965 - GFF5037 0.46 -0.7
137,965 - GFF5037 0.46 -0.5
137,965 - GFF5037 0.46 +0.7
137,965 - GFF5037 0.46 -1.0
138,117 + GFF5037 0.60 -0.6
138,117 + GFF5037 0.60 -0.1
138,117 + GFF5037 0.60 -0.2
138,117 + GFF5037 0.60 +0.3
138,118 - GFF5037 0.60 +0.5
138,118 - GFF5037 0.60 -1.3
138,118 - GFF5037 0.60 +0.0
138,118 - GFF5037 0.60 +0.6
138,118 - GFF5037 0.60 -0.4
138,118 - GFF5037 0.60 +0.3
138,118 - GFF5037 0.60 -0.2
138,118 - GFF5037 0.60 +0.1
138,118 - GFF5037 0.60 -2.7
138,118 - GFF5037 0.60 +1.1
138,118 - GFF5037 0.60 -0.7
138,231 + GFF5037 0.71 -1.1
138,231 + GFF5037 0.71 +0.4
138,232 - GFF5037 0.71 -0.5
138,366 + GFF5037 0.84 -0.9
138,367 - GFF5037 0.84 -0.9
138,526 + +0.3
138,526 + -1.3
138,526 + -1.0
138,526 + +0.7
138,526 + -0.4
138,526 + +0.1
138,527 - +0.4
138,527 - -0.4
138,599 + -0.6
138,599 + -0.3
138,600 - -0.9
138,600 - -0.7
138,656 + -0.5
138,656 + -0.9
138,656 + +0.2
138,657 - -0.2
138,860 + GFF5038 0.26 -0.7
139,025 + GFF5038 0.39 -0.8
139,025 + GFF5038 0.39 -0.3
139,025 + GFF5038 0.39 -0.5
139,025 + GFF5038 0.39 -0.4
139,026 - GFF5038 0.39 -1.1
139,268 + GFF5038 0.59 -1.7
139,268 + GFF5038 0.59 -1.1
139,583 + GFF5038 0.85 -0.3
139,583 + GFF5038 0.85 -0.7
139,583 + GFF5038 0.85 -1.1
139,584 - GFF5038 0.85 -0.9
139,754 + +0.9
139,754 + -0.3
139,754 + +0.2
139,754 + -2.1
139,754 + +0.2
139,755 - +0.6
139,755 - +0.1
139,755 - +0.4
139,755 - -0.3
139,755 - -1.1
139,755 - -0.9
139,755 - -1.0
139,813 + GFF5039 0.11 -0.5
139,813 + GFF5039 0.11 +0.7
139,813 + GFF5039 0.11 -0.4
139,813 + GFF5039 0.11 -0.1
139,813 + GFF5039 0.11 +0.5
139,968 + GFF5039 0.53 +0.9
139,968 + GFF5039 0.53 -0.7
140,263 - -1.1
140,263 - -1.1
140,379 + -0.2
140,380 - +0.5
140,477 + -0.8
140,477 + +0.3
140,477 + +0.1
140,477 + -0.3
140,478 - +0.2
140,478 - +0.0
140,532 + -0.3
140,532 + -1.1
140,532 + +0.1
140,533 - -1.2
140,735 + GFF5040 0.16 -0.6
140,735 + GFF5040 0.16 -0.4
140,736 - GFF5040 0.16 +0.1
140,768 + GFF5040 0.18 +1.7
140,769 - GFF5040 0.18 +0.3

Or see this region's nucleotide sequence