Strain Fitness in Variovorax sp. SCN45 around GFF5000

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4998 and GFF4999 are separated by 12 nucleotidesGFF4999 and GFF5000 overlap by 8 nucleotidesGFF5000 and GFF5001 overlap by 4 nucleotides GFF4998 - L-carnitine dehydratase/bile acid-inducible protein F, at 96,817 to 98,058 GFF4998 GFF4999 - hypothetical protein, at 98,071 to 98,385 GFF4999 GFF5000 - PUTATIVE ZINC PROTEASE PROTEIN, at 98,378 to 99,502 GFF5000 GFF5001 - Oxidoreductase, molybdopterin-binding, at 99,499 to 101,559 GFF5001 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 97.409 kb on + strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.634 kb on + strand, within GFF4998at 97.925 kb on + strand, within GFF4998at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.370 kb on + strandat 98.371 kb on - strandat 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.625 kb on + strand, within GFF5000at 98.626 kb on - strand, within GFF5000at 98.626 kb on - strand, within GFF5000at 98.671 kb on - strand, within GFF5000at 98.671 kb on - strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.830 kb on - strand, within GFF5000at 98.830 kb on - strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.073 kb on - strand, within GFF5000at 99.073 kb on - strand, within GFF5000at 99.073 kb on - strand, within GFF5000at 99.138 kb on + strand, within GFF5000at 99.138 kb on + strand, within GFF5000at 99.139 kb on - strand, within GFF5000at 99.139 kb on - strand, within GFF5000at 99.141 kb on + strand, within GFF5000at 99.142 kb on - strand, within GFF5000at 99.142 kb on - strand, within GFF5000at 99.142 kb on - strand, within GFF5000at 99.202 kb on - strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.432 kb on + strandat 99.432 kb on + strandat 99.432 kb on + strandat 99.432 kb on + strandat 99.432 kb on + strandat 99.432 kb on + strandat 99.432 kb on + strandat 99.433 kb on - strandat 99.433 kb on - strandat 99.433 kb on - strandat 99.433 kb on - strandat 99.433 kb on - strandat 99.433 kb on - strandat 99.435 kb on + strandat 99.435 kb on + strandat 99.436 kb on - strandat 99.436 kb on - strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.530 kb on + strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.531 kb on - strandat 99.693 kb on - strandat 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.214 kb on + strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.215 kb on - strand, within GFF5001at 100.265 kb on + strand, within GFF5001at 100.265 kb on + strand, within GFF5001at 100.265 kb on + strand, within GFF5001at 100.265 kb on + strand, within GFF5001at 100.265 kb on + strand, within GFF5001at 100.265 kb on + strand, within GFF5001at 100.266 kb on - strand, within GFF5001at 100.266 kb on - strand, within GFF5001at 100.266 kb on - strand, within GFF5001at 100.266 kb on - strand, within GFF5001at 100.266 kb on - strand, within GFF5001at 100.266 kb on - strand, within GFF5001at 100.266 kb on - strand, within GFF5001at 100.388 kb on + strand, within GFF5001at 100.388 kb on + strand, within GFF5001at 100.389 kb on - strand, within GFF5001at 100.389 kb on - strand, within GFF5001at 100.389 kb on - strand, within GFF5001at 100.389 kb on - strand, within GFF5001at 100.389 kb on - strand, within GFF5001at 100.447 kb on - strand, within GFF5001

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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97,409 + GFF4998 0.48 -0.4
97,409 + GFF4998 0.48 +0.4
97,409 + GFF4998 0.48 +0.8
97,410 - GFF4998 0.48 +0.8
97,410 - GFF4998 0.48 -1.6
97,410 - GFF4998 0.48 -0.2
97,634 + GFF4998 0.66 -1.4
97,925 + GFF4998 0.89 +0.7
98,273 + GFF4999 0.64 -0.2
98,273 + GFF4999 0.64 -0.3
98,273 + GFF4999 0.64 +0.3
98,273 + GFF4999 0.64 -0.2
98,274 - GFF4999 0.64 +1.1
98,274 - GFF4999 0.64 +0.9
98,274 - GFF4999 0.64 -0.6
98,274 - GFF4999 0.64 +1.7
98,274 - GFF4999 0.64 -1.7
98,370 + +0.7
98,371 - -0.4
98,505 + GFF5000 0.11 -0.1
98,505 + GFF5000 0.11 -1.8
98,505 + GFF5000 0.11 -0.2
98,505 + GFF5000 0.11 -0.7
98,505 + GFF5000 0.11 +0.1
98,505 + GFF5000 0.11 +0.9
98,505 + GFF5000 0.11 +0.1
98,505 + GFF5000 0.11 -0.1
98,506 - GFF5000 0.11 -0.0
98,506 - GFF5000 0.11 +0.7
98,506 - GFF5000 0.11 -0.5
98,506 - GFF5000 0.11 +0.0
98,506 - GFF5000 0.11 +0.3
98,506 - GFF5000 0.11 -2.3
98,571 + GFF5000 0.17 +0.0
98,571 + GFF5000 0.17 +0.6
98,571 + GFF5000 0.17 +0.5
98,571 + GFF5000 0.17 +0.7
98,625 + GFF5000 0.22 +0.7
98,626 - GFF5000 0.22 -0.1
98,626 - GFF5000 0.22 +0.1
98,671 - GFF5000 0.26 -0.3
98,671 - GFF5000 0.26 -0.3
98,754 + GFF5000 0.33 +0.4
98,754 + GFF5000 0.33 -0.7
98,754 + GFF5000 0.33 -0.0
98,755 - GFF5000 0.34 +0.7
98,755 - GFF5000 0.34 +0.3
98,755 - GFF5000 0.34 -0.8
98,755 - GFF5000 0.34 -0.3
98,755 - GFF5000 0.34 -0.8
98,755 - GFF5000 0.34 -0.3
98,755 - GFF5000 0.34 -0.1
98,830 - GFF5000 0.40 -0.1
98,830 - GFF5000 0.40 -0.3
98,904 + GFF5000 0.47 +0.7
98,904 + GFF5000 0.47 +2.7
98,904 + GFF5000 0.47 -0.0
98,904 + GFF5000 0.47 -0.2
98,904 + GFF5000 0.47 -1.9
98,905 - GFF5000 0.47 -0.3
98,905 - GFF5000 0.47 -0.5
98,905 - GFF5000 0.47 +0.2
98,905 - GFF5000 0.47 -0.5
98,905 - GFF5000 0.47 +0.5
98,905 - GFF5000 0.47 -0.1
98,937 + GFF5000 0.50 +0.7
98,937 + GFF5000 0.50 +0.3
98,937 + GFF5000 0.50 +0.3
98,937 + GFF5000 0.50 -0.3
98,937 + GFF5000 0.50 -0.3
98,937 + GFF5000 0.50 -1.1
98,937 + GFF5000 0.50 -1.2
98,937 + GFF5000 0.50 -0.4
98,938 - GFF5000 0.50 -0.4
98,938 - GFF5000 0.50 +0.6
98,938 - GFF5000 0.50 -0.8
98,938 - GFF5000 0.50 +0.5
98,938 - GFF5000 0.50 -0.6
98,938 - GFF5000 0.50 -1.1
98,938 - GFF5000 0.50 -0.9
98,938 - GFF5000 0.50 +0.4
99,057 + GFF5000 0.60 -0.0
99,057 + GFF5000 0.60 -0.3
99,057 + GFF5000 0.60 -0.0
99,057 + GFF5000 0.60 +0.2
99,057 + GFF5000 0.60 +0.3
99,058 - GFF5000 0.60 +0.9
99,058 - GFF5000 0.60 +0.1
99,058 - GFF5000 0.60 +0.3
99,058 - GFF5000 0.60 -1.7
99,073 - GFF5000 0.62 -0.3
99,073 - GFF5000 0.62 -0.4
99,073 - GFF5000 0.62 +0.0
99,138 + GFF5000 0.68 -0.9
99,138 + GFF5000 0.68 -0.7
99,139 - GFF5000 0.68 -0.4
99,139 - GFF5000 0.68 +0.6
99,141 + GFF5000 0.68 -0.3
99,142 - GFF5000 0.68 -0.2
99,142 - GFF5000 0.68 -0.4
99,142 - GFF5000 0.68 -0.2
99,202 - GFF5000 0.73 -0.5
99,255 + GFF5000 0.78 -0.6
99,255 + GFF5000 0.78 +0.3
99,255 + GFF5000 0.78 -0.0
99,255 + GFF5000 0.78 -0.2
99,255 + GFF5000 0.78 -1.7
99,256 - GFF5000 0.78 -0.6
99,256 - GFF5000 0.78 +0.5
99,256 - GFF5000 0.78 +0.7
99,256 - GFF5000 0.78 -0.7
99,264 + GFF5000 0.79 -0.2
99,264 + GFF5000 0.79 +0.7
99,264 + GFF5000 0.79 -0.3
99,264 + GFF5000 0.79 -1.6
99,264 + GFF5000 0.79 -0.1
99,264 + GFF5000 0.79 +0.7
99,264 + GFF5000 0.79 -0.4
99,264 + GFF5000 0.79 -1.1
99,264 + GFF5000 0.79 +2.7
99,264 + GFF5000 0.79 -0.9
99,265 - GFF5000 0.79 -0.2
99,265 - GFF5000 0.79 +0.0
99,265 - GFF5000 0.79 -0.6
99,265 - GFF5000 0.79 -1.2
99,265 - GFF5000 0.79 +0.7
99,265 - GFF5000 0.79 +0.1
99,265 - GFF5000 0.79 +0.6
99,265 - GFF5000 0.79 -0.3
99,265 - GFF5000 0.79 -1.0
99,265 - GFF5000 0.79 -1.1
99,265 - GFF5000 0.79 +0.1
99,265 - GFF5000 0.79 -0.1
99,265 - GFF5000 0.79 +0.9
99,265 - GFF5000 0.79 -0.4
99,265 - GFF5000 0.79 +0.4
99,265 - GFF5000 0.79 -0.3
99,265 - GFF5000 0.79 -0.3
99,265 - GFF5000 0.79 +0.2
99,265 - GFF5000 0.79 -0.1
99,265 - GFF5000 0.79 +0.3
99,265 - GFF5000 0.79 +0.4
99,432 + +0.1
99,432 + -0.7
99,432 + +1.7
99,432 + -0.2
99,432 + -0.1
99,432 + +0.3
99,432 + -0.3
99,433 - -0.4
99,433 - -0.1
99,433 - -0.9
99,433 - +1.3
99,433 - -0.3
99,433 - -0.0
99,435 + +0.7
99,435 + +0.5
99,436 - -0.3
99,436 - +2.1
99,530 + +0.1
99,530 + -0.3
99,530 + +0.3
99,530 + -0.1
99,530 + -0.0
99,530 + -0.2
99,530 + -0.2
99,530 + +0.4
99,530 + -0.1
99,530 + -0.2
99,530 + -0.4
99,531 - +0.0
99,531 - +0.9
99,531 - +0.3
99,531 - -0.9
99,531 - -0.3
99,531 - +0.8
99,531 - +0.2
99,531 - +0.1
99,531 - -0.6
99,531 - +0.9
99,693 - +0.5
100,214 + GFF5001 0.35 +1.7
100,214 + GFF5001 0.35 -0.5
100,214 + GFF5001 0.35 +0.7
100,214 + GFF5001 0.35 -1.9
100,214 + GFF5001 0.35 +0.4
100,214 + GFF5001 0.35 +0.7
100,214 + GFF5001 0.35 +1.9
100,214 + GFF5001 0.35 -1.2
100,214 + GFF5001 0.35 -0.1
100,214 + GFF5001 0.35 -1.1
100,214 + GFF5001 0.35 -0.1
100,214 + GFF5001 0.35 +0.3
100,214 + GFF5001 0.35 -0.3
100,214 + GFF5001 0.35 +0.4
100,215 - GFF5001 0.35 +0.3
100,215 - GFF5001 0.35 -0.8
100,215 - GFF5001 0.35 -1.5
100,215 - GFF5001 0.35 -0.1
100,215 - GFF5001 0.35 +0.2
100,215 - GFF5001 0.35 -0.1
100,215 - GFF5001 0.35 +1.4
100,215 - GFF5001 0.35 +1.0
100,215 - GFF5001 0.35 -0.1
100,265 + GFF5001 0.37 +0.1
100,265 + GFF5001 0.37 -0.7
100,265 + GFF5001 0.37 -0.3
100,265 + GFF5001 0.37 -0.4
100,265 + GFF5001 0.37 -1.6
100,265 + GFF5001 0.37 -0.2
100,266 - GFF5001 0.37 -0.2
100,266 - GFF5001 0.37 +0.1
100,266 - GFF5001 0.37 +0.4
100,266 - GFF5001 0.37 -0.8
100,266 - GFF5001 0.37 +0.5
100,266 - GFF5001 0.37 -0.8
100,266 - GFF5001 0.37 +0.2
100,388 + GFF5001 0.43 -0.3
100,388 + GFF5001 0.43 +0.4
100,389 - GFF5001 0.43 -0.7
100,389 - GFF5001 0.43 -0.1
100,389 - GFF5001 0.43 -1.3
100,389 - GFF5001 0.43 +0.3
100,389 - GFF5001 0.43 -0.1
100,447 - GFF5001 0.46 -0.2

Or see this region's nucleotide sequence