Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4905 and GFF4906 are separated by 105 nucleotides
GFF4905 - hypothetical protein, at 269,740 to 271,149
GFF4905
GFF4906 - hypothetical protein, at 271,255 to 273,033
GFF4906
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.269 kb on - strand, within GFF4905 at 270.269 kb on - strand, within GFF4905 at 270.301 kb on + strand, within GFF4905 at 270.301 kb on + strand, within GFF4905 at 270.301 kb on + strand, within GFF4905 at 270.301 kb on + strand, within GFF4905 at 270.301 kb on + strand, within GFF4905 at 270.301 kb on + strand, within GFF4905 at 270.502 kb on + strand, within GFF4905 at 270.502 kb on + strand, within GFF4905 at 270.502 kb on + strand, within GFF4905 at 270.503 kb on - strand, within GFF4905 at 270.503 kb on - strand, within GFF4905 at 270.503 kb on - strand, within GFF4905 at 270.503 kb on - strand, within GFF4905 at 270.637 kb on + strand, within GFF4905 at 270.637 kb on + strand, within GFF4905 at 270.637 kb on + strand, within GFF4905 at 270.637 kb on + strand, within GFF4905 at 270.638 kb on - strand, within GFF4905 at 270.638 kb on - strand, within GFF4905 at 270.638 kb on - strand, within GFF4905 at 270.638 kb on - strand, within GFF4905 at 270.638 kb on - strand, within GFF4905 at 270.638 kb on - strand, within GFF4905 at 271.147 kb on + strand at 271.147 kb on + strand at 271.147 kb on + strand at 271.148 kb on - strand at 271.174 kb on + strand at 271.175 kb on - strand at 271.175 kb on - strand at 271.175 kb on - strand at 271.175 kb on - strand at 271.175 kb on - strand at 271.794 kb on + strand, within GFF4906 at 271.795 kb on - strand, within GFF4906 at 271.802 kb on - strand, within GFF4906 at 271.802 kb on - strand, within GFF4906 at 271.802 kb on - strand, within GFF4906 at 271.802 kb on - strand, within GFF4906 at 271.837 kb on + strand, within GFF4906 at 271.838 kb on - strand, within GFF4906 at 271.838 kb on - strand, within GFF4906 at 271.838 kb on - strand, within GFF4906 at 271.838 kb on - strand, within GFF4906 at 272.103 kb on + strand, within GFF4906 at 272.103 kb on + strand, within GFF4906 at 272.103 kb on + strand, within GFF4906 at 272.124 kb on + strand, within GFF4906 at 272.124 kb on + strand, within GFF4906 at 272.125 kb on - strand, within GFF4906 at 272.639 kb on - strand, within GFF4906 at 272.639 kb on - strand, within GFF4906 at 272.639 kb on - strand, within GFF4906 at 272.639 kb on - strand, within GFF4906 at 272.761 kb on + strand, within GFF4906 at 272.761 kb on + strand, within GFF4906 at 272.761 kb on + strand, within GFF4906 at 272.905 kb on + strand at 272.905 kb on + strand at 272.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 270,269 - GFF4905 0.38 +0.2 270,269 - GFF4905 0.38 -0.5 270,301 + GFF4905 0.40 +0.5 270,301 + GFF4905 0.40 +0.6 270,301 + GFF4905 0.40 -0.4 270,301 + GFF4905 0.40 -0.4 270,301 + GFF4905 0.40 -0.2 270,301 + GFF4905 0.40 -0.1 270,502 + GFF4905 0.54 +0.6 270,502 + GFF4905 0.54 -0.7 270,502 + GFF4905 0.54 -0.2 270,503 - GFF4905 0.54 +0.7 270,503 - GFF4905 0.54 -0.2 270,503 - GFF4905 0.54 -0.0 270,503 - GFF4905 0.54 -0.9 270,637 + GFF4905 0.64 -0.6 270,637 + GFF4905 0.64 -0.9 270,637 + GFF4905 0.64 -0.6 270,637 + GFF4905 0.64 -0.5 270,638 - GFF4905 0.64 -0.9 270,638 - GFF4905 0.64 -0.6 270,638 - GFF4905 0.64 -0.1 270,638 - GFF4905 0.64 +1.0 270,638 - GFF4905 0.64 -0.0 270,638 - GFF4905 0.64 -1.1 271,147 + -0.3 271,147 + -0.7 271,147 + -1.1 271,148 - +0.2 271,174 + +1.0 271,175 - +0.5 271,175 - -0.5 271,175 - -0.3 271,175 - -0.7 271,175 - -0.4 271,794 + GFF4906 0.30 -0.9 271,795 - GFF4906 0.30 -0.3 271,802 - GFF4906 0.31 -1.2 271,802 - GFF4906 0.31 -0.5 271,802 - GFF4906 0.31 +2.2 271,802 - GFF4906 0.31 +0.3 271,837 + GFF4906 0.33 -1.1 271,838 - GFF4906 0.33 -0.5 271,838 - GFF4906 0.33 -1.2 271,838 - GFF4906 0.33 +0.1 271,838 - GFF4906 0.33 -0.3 272,103 + GFF4906 0.48 +0.2 272,103 + GFF4906 0.48 -0.4 272,103 + GFF4906 0.48 +1.2 272,124 + GFF4906 0.49 +0.6 272,124 + GFF4906 0.49 -0.7 272,125 - GFF4906 0.49 -0.1 272,639 - GFF4906 0.78 +0.5 272,639 - GFF4906 0.78 -0.8 272,639 - GFF4906 0.78 -1.7 272,639 - GFF4906 0.78 -2.0 272,761 + GFF4906 0.85 -1.1 272,761 + GFF4906 0.85 -0.4 272,761 + GFF4906 0.85 +0.0 272,905 + -0.9 272,905 + +0.3 272,906 - -0.7
Or see this region's nucleotide sequence