Strain Fitness in Variovorax sp. SCN45 around GFF4634

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4632 and GFF4633 overlap by 4 nucleotidesGFF4633 and GFF4634 are separated by 1 nucleotidesGFF4634 and GFF4635 overlap by 4 nucleotidesGFF4635 and GFF4636 are separated by 25 nucleotides GFF4632 - Glycosyl transferase, family 2, at 273,509 to 274,456 GFF4632 GFF4633 - no description, at 274,453 to 274,818 GFF4633 GFF4634 - Transketolase, C-terminal section (EC 2.2.1.1), at 274,820 to 275,737 GFF4634 GFF4635 - Transketolase, N-terminal section (EC 2.2.1.1), at 275,734 to 276,546 GFF4635 GFF4636 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 276,572 to 277,567 GFF4636 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.822 kb on + strand, within GFF4632at 273.823 kb on - strand, within GFF4632at 273.823 kb on - strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.876 kb on + strand, within GFF4632at 273.876 kb on + strand, within GFF4632at 273.876 kb on + strand, within GFF4632at 273.877 kb on - strand, within GFF4632at 273.877 kb on - strand, within GFF4632at 273.877 kb on - strand, within GFF4632at 273.927 kb on + strand, within GFF4632at 273.979 kb on - strand, within GFF4632at 273.979 kb on - strand, within GFF4632at 273.979 kb on - strand, within GFF4632at 274.041 kb on + strand, within GFF4632at 274.042 kb on - strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.045 kb on - strand, within GFF4632at 274.045 kb on - strand, within GFF4632at 274.045 kb on - strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.535 kb on + strand, within GFF4633at 274.535 kb on + strand, within GFF4633at 274.536 kb on - strand, within GFF4633at 274.536 kb on - strand, within GFF4633at 274.563 kb on - strand, within GFF4633at 274.601 kb on + strand, within GFF4633at 274.601 kb on + strand, within GFF4633at 274.601 kb on + strand, within GFF4633at 274.602 kb on - strand, within GFF4633at 274.602 kb on - strand, within GFF4633at 274.602 kb on - strand, within GFF4633at 274.735 kb on + strand, within GFF4633at 274.757 kb on + strand, within GFF4633at 274.908 kb on + strandat 274.908 kb on + strandat 274.909 kb on - strandat 274.909 kb on - strandat 275.280 kb on + strand, within GFF4634at 275.280 kb on + strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.359 kb on + strand, within GFF4634at 275.360 kb on - strand, within GFF4634at 275.360 kb on - strand, within GFF4634at 275.361 kb on + strand, within GFF4634at 275.361 kb on + strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.386 kb on + strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.473 kb on - strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.656 kb on - strandat 275.775 kb on - strandat 275.798 kb on + strandat 275.798 kb on + strandat 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 276.012 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.138 kb on - strand, within GFF4635at 276.138 kb on - strand, within GFF4635at 276.184 kb on + strand, within GFF4635at 276.184 kb on + strand, within GFF4635at 276.185 kb on - strand, within GFF4635at 276.185 kb on - strand, within GFF4635at 276.214 kb on - strand, within GFF4635at 276.214 kb on - strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.336 kb on - strand, within GFF4635at 276.336 kb on - strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.410 kb on + strand, within GFF4635at 276.491 kb on + strandat 276.492 kb on - strandat 276.492 kb on - strandat 276.690 kb on + strand, within GFF4636at 276.690 kb on + strand, within GFF4636at 276.691 kb on - strand, within GFF4636at 276.691 kb on - strand, within GFF4636

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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273,822 + GFF4632 0.33 -0.8
273,823 - GFF4632 0.33 -0.2
273,823 - GFF4632 0.33 +0.6
273,831 + GFF4632 0.34 +0.1
273,831 + GFF4632 0.34 +0.2
273,831 + GFF4632 0.34 -0.7
273,831 + GFF4632 0.34 -0.1
273,831 + GFF4632 0.34 -0.4
273,831 + GFF4632 0.34 -0.4
273,832 - GFF4632 0.34 +0.0
273,832 - GFF4632 0.34 +0.7
273,832 - GFF4632 0.34 +1.2
273,832 - GFF4632 0.34 -0.9
273,832 - GFF4632 0.34 -0.7
273,832 - GFF4632 0.34 -0.0
273,832 - GFF4632 0.34 +0.0
273,832 - GFF4632 0.34 +2.3
273,832 - GFF4632 0.34 +0.8
273,832 - GFF4632 0.34 -0.2
273,876 + GFF4632 0.39 -0.6
273,876 + GFF4632 0.39 -1.2
273,876 + GFF4632 0.39 -0.7
273,877 - GFF4632 0.39 -0.8
273,877 - GFF4632 0.39 -0.7
273,877 - GFF4632 0.39 -0.7
273,927 + GFF4632 0.44 -0.4
273,979 - GFF4632 0.50 -0.5
273,979 - GFF4632 0.50 -1.2
273,979 - GFF4632 0.50 -0.6
274,041 + GFF4632 0.56 -0.2
274,042 - GFF4632 0.56 -0.4
274,044 + GFF4632 0.56 +0.3
274,044 + GFF4632 0.56 -1.2
274,044 + GFF4632 0.56 -1.6
274,044 + GFF4632 0.56 -2.2
274,045 - GFF4632 0.57 -1.8
274,045 - GFF4632 0.57 -0.7
274,045 - GFF4632 0.57 -0.9
274,350 + GFF4632 0.89 -0.2
274,350 + GFF4632 0.89 -0.9
274,350 + GFF4632 0.89 -0.6
274,350 + GFF4632 0.89 -0.1
274,350 + GFF4632 0.89 -0.4
274,350 + GFF4632 0.89 -0.6
274,350 + GFF4632 0.89 -0.4
274,351 - GFF4632 0.89 +0.1
274,351 - GFF4632 0.89 -1.2
274,351 - GFF4632 0.89 +0.3
274,351 - GFF4632 0.89 -0.7
274,351 - GFF4632 0.89 +1.6
274,351 - GFF4632 0.89 -0.1
274,351 - GFF4632 0.89 -1.2
274,351 - GFF4632 0.89 -0.3
274,426 - -1.2
274,426 - -0.9
274,426 - -0.2
274,426 - +0.0
274,426 - -1.6
274,426 - +0.1
274,426 - -0.4
274,535 + GFF4633 0.22 +0.2
274,535 + GFF4633 0.22 -0.2
274,536 - GFF4633 0.23 -0.1
274,536 - GFF4633 0.23 -0.3
274,563 - GFF4633 0.30 -0.1
274,601 + GFF4633 0.40 -0.5
274,601 + GFF4633 0.40 +0.9
274,601 + GFF4633 0.40 +0.3
274,602 - GFF4633 0.41 -0.1
274,602 - GFF4633 0.41 -0.0
274,602 - GFF4633 0.41 -0.2
274,735 + GFF4633 0.77 +0.5
274,757 + GFF4633 0.83 -1.2
274,908 + -0.7
274,908 + +0.5
274,909 - -1.0
274,909 - +2.4
275,280 + GFF4634 0.50 +0.6
275,280 + GFF4634 0.50 -1.2
275,281 - GFF4634 0.50 -0.6
275,281 - GFF4634 0.50 -1.5
275,281 - GFF4634 0.50 +0.3
275,359 + GFF4634 0.59 -0.9
275,360 - GFF4634 0.59 +0.6
275,360 - GFF4634 0.59 +0.6
275,361 + GFF4634 0.59 -2.0
275,361 + GFF4634 0.59 +0.6
275,362 - GFF4634 0.59 -0.9
275,362 - GFF4634 0.59 -0.2
275,362 - GFF4634 0.59 +0.6
275,386 + GFF4634 0.62 -1.0
275,425 - GFF4634 0.66 +1.0
275,425 - GFF4634 0.66 -0.2
275,425 - GFF4634 0.66 +0.4
275,473 - GFF4634 0.71 -0.7
275,613 + GFF4634 0.86 -1.0
275,613 + GFF4634 0.86 -1.0
275,613 + GFF4634 0.86 -1.0
275,613 + GFF4634 0.86 +0.4
275,613 + GFF4634 0.86 -0.7
275,613 + GFF4634 0.86 -0.3
275,614 - GFF4634 0.86 -0.6
275,614 - GFF4634 0.86 -1.6
275,614 - GFF4634 0.86 +0.3
275,614 - GFF4634 0.86 +0.1
275,614 - GFF4634 0.86 -0.6
275,656 - -0.7
275,775 - -0.1
275,798 + +0.1
275,798 + -0.6
275,825 + GFF4635 0.11 -0.7
275,825 + GFF4635 0.11 +0.5
275,825 + GFF4635 0.11 +0.1
275,825 + GFF4635 0.11 +0.6
275,825 + GFF4635 0.11 -0.4
275,825 + GFF4635 0.11 -0.4
275,826 - GFF4635 0.11 +1.0
275,826 - GFF4635 0.11 -1.0
275,826 - GFF4635 0.11 -0.2
275,826 - GFF4635 0.11 -0.5
275,826 - GFF4635 0.11 -0.7
275,826 - GFF4635 0.11 -1.0
275,826 - GFF4635 0.11 -0.3
275,826 - GFF4635 0.11 +0.9
276,012 + GFF4635 0.34 -1.0
276,137 + GFF4635 0.50 -0.1
276,137 + GFF4635 0.50 -1.3
276,137 + GFF4635 0.50 -0.4
276,138 - GFF4635 0.50 -0.3
276,138 - GFF4635 0.50 +0.8
276,184 + GFF4635 0.55 -0.1
276,184 + GFF4635 0.55 -2.6
276,185 - GFF4635 0.55 -0.4
276,185 - GFF4635 0.55 -0.1
276,214 - GFF4635 0.59 +0.1
276,214 - GFF4635 0.59 -0.6
276,284 + GFF4635 0.68 +0.3
276,284 + GFF4635 0.68 -0.6
276,284 + GFF4635 0.68 -1.6
276,284 + GFF4635 0.68 -0.8
276,284 + GFF4635 0.68 -0.4
276,284 + GFF4635 0.68 -1.0
276,284 + GFF4635 0.68 +0.4
276,284 + GFF4635 0.68 +1.0
276,284 + GFF4635 0.68 -0.6
276,284 + GFF4635 0.68 -0.9
276,285 - GFF4635 0.68 -0.9
276,285 - GFF4635 0.68 +0.1
276,285 - GFF4635 0.68 -0.1
276,285 - GFF4635 0.68 -1.0
276,285 - GFF4635 0.68 -0.2
276,335 + GFF4635 0.74 -1.5
276,335 + GFF4635 0.74 +0.2
276,335 + GFF4635 0.74 -1.7
276,336 - GFF4635 0.74 -0.7
276,336 - GFF4635 0.74 -0.2
276,374 + GFF4635 0.79 +0.1
276,374 + GFF4635 0.79 -1.4
276,374 + GFF4635 0.79 -0.3
276,410 + GFF4635 0.83 -0.5
276,491 + +0.3
276,492 - +0.1
276,492 - -0.0
276,690 + GFF4636 0.12 -0.6
276,690 + GFF4636 0.12 -0.3
276,691 - GFF4636 0.12 +0.6
276,691 - GFF4636 0.12 -1.0

Or see this region's nucleotide sequence