Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4551 and GFF4552 are separated by 8 nucleotides GFF4552 and GFF4553 are separated by 51 nucleotides GFF4553 and GFF4554 are separated by 62 nucleotides
GFF4551 - Putative preQ0 transporter YhhQ, at 188,784 to 189,353
GFF4551
GFF4552 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 189,362 to 189,991
GFF4552
GFF4553 - RNA chaperone ProQ, at 190,043 to 191,032
GFF4553
GFF4554 - Protease HtpX, at 191,095 to 191,970
GFF4554
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.509 kb on + strand, within GFF4552 at 189.533 kb on + strand, within GFF4552 at 189.533 kb on + strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.941 kb on + strand at 189.941 kb on + strand at 189.941 kb on + strand at 189.941 kb on + strand at 189.941 kb on + strand at 189.942 kb on - strand at 189.942 kb on - strand at 189.942 kb on - strand at 189.942 kb on - strand at 190.358 kb on + strand, within GFF4553 at 190.358 kb on + strand, within GFF4553 at 190.358 kb on + strand, within GFF4553 at 190.359 kb on - strand, within GFF4553 at 190.406 kb on + strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.493 kb on + strand, within GFF4553 at 190.494 kb on - strand, within GFF4553 at 190.494 kb on - strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 191.073 kb on + strand at 191.073 kb on + strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.381 kb on + strand, within GFF4554 at 191.382 kb on - strand, within GFF4554 at 191.382 kb on - strand, within GFF4554 at 191.441 kb on + strand, within GFF4554 at 191.442 kb on - strand, within GFF4554 at 191.442 kb on - strand, within GFF4554 at 191.961 kb on + strand at 191.961 kb on + strand at 191.961 kb on + strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 192.005 kb on + strand at 192.005 kb on + strand at 192.005 kb on + strand at 192.006 kb on - strand at 192.006 kb on - strand at 192.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 189,392 + -0.6 189,392 + +0.3 189,392 + +0.1 189,392 + -0.2 189,392 + -0.7 189,392 + +1.0 189,392 + +0.0 189,393 - -0.0 189,393 - +0.6 189,393 - -1.1 189,393 - -1.4 189,393 - -0.1 189,393 - +0.3 189,509 + GFF4552 0.23 -0.4 189,533 + GFF4552 0.27 +0.4 189,533 + GFF4552 0.27 +0.5 189,534 - GFF4552 0.27 +0.4 189,534 - GFF4552 0.27 -1.8 189,534 - GFF4552 0.27 -0.1 189,534 - GFF4552 0.27 -0.0 189,534 - GFF4552 0.27 -0.6 189,534 - GFF4552 0.27 -0.1 189,534 - GFF4552 0.27 -0.4 189,534 - GFF4552 0.27 -0.6 189,534 - GFF4552 0.27 -0.8 189,890 + GFF4552 0.84 +0.9 189,890 + GFF4552 0.84 +0.2 189,890 + GFF4552 0.84 -0.2 189,890 + GFF4552 0.84 +0.6 189,890 + GFF4552 0.84 -1.0 189,890 + GFF4552 0.84 -1.5 189,890 + GFF4552 0.84 -0.3 189,890 + GFF4552 0.84 -0.5 189,890 + GFF4552 0.84 -0.6 189,890 + GFF4552 0.84 +0.1 189,890 + GFF4552 0.84 -0.2 189,891 - GFF4552 0.84 +0.0 189,891 - GFF4552 0.84 +0.6 189,891 - GFF4552 0.84 +0.7 189,891 - GFF4552 0.84 -0.2 189,891 - GFF4552 0.84 +0.2 189,941 + -0.5 189,941 + -0.3 189,941 + -0.1 189,941 + +0.2 189,941 + -0.5 189,942 - -1.1 189,942 - -0.2 189,942 - -0.1 189,942 - -0.4 190,358 + GFF4553 0.32 -0.5 190,358 + GFF4553 0.32 +0.2 190,358 + GFF4553 0.32 -1.7 190,359 - GFF4553 0.32 -0.8 190,406 + GFF4553 0.37 -1.1 190,407 - GFF4553 0.37 -1.2 190,407 - GFF4553 0.37 +1.0 190,407 - GFF4553 0.37 +0.5 190,407 - GFF4553 0.37 -1.0 190,493 + GFF4553 0.45 +0.3 190,494 - GFF4553 0.46 -0.1 190,494 - GFF4553 0.46 -0.6 190,700 + GFF4553 0.66 -0.2 190,700 + GFF4553 0.66 -0.9 190,700 + GFF4553 0.66 -1.6 190,700 + GFF4553 0.66 -0.8 190,700 + GFF4553 0.66 +0.4 190,700 + GFF4553 0.66 +0.2 190,700 + GFF4553 0.66 -0.8 190,700 + GFF4553 0.66 +0.2 190,700 + GFF4553 0.66 +0.3 190,701 - GFF4553 0.66 -0.6 190,701 - GFF4553 0.66 +0.8 190,701 - GFF4553 0.66 -0.5 190,701 - GFF4553 0.66 -0.2 190,701 - GFF4553 0.66 +0.2 190,701 - GFF4553 0.66 +0.4 190,701 - GFF4553 0.66 -0.3 190,701 - GFF4553 0.66 +0.2 190,701 - GFF4553 0.66 +0.1 190,850 + GFF4553 0.82 -0.3 190,850 + GFF4553 0.82 -0.9 190,850 + GFF4553 0.82 -0.6 190,850 + GFF4553 0.82 +0.8 190,850 + GFF4553 0.82 -1.1 190,850 + GFF4553 0.82 -0.5 190,850 + GFF4553 0.82 -0.0 190,850 + GFF4553 0.82 -0.1 190,850 + GFF4553 0.82 +0.1 190,850 + GFF4553 0.82 -0.7 190,850 + GFF4553 0.82 -0.1 190,850 + GFF4553 0.82 +0.1 190,850 + GFF4553 0.82 -0.6 190,850 + GFF4553 0.82 -0.2 190,850 + GFF4553 0.82 -0.3 190,850 + GFF4553 0.82 +0.0 190,850 + GFF4553 0.82 -1.0 190,850 + GFF4553 0.82 -0.4 190,850 + GFF4553 0.82 +0.3 190,850 + GFF4553 0.82 -0.5 190,850 + GFF4553 0.82 -0.5 190,850 + GFF4553 0.82 +0.6 190,850 + GFF4553 0.82 +0.2 190,850 + GFF4553 0.82 -0.7 190,850 + GFF4553 0.82 -0.9 190,850 + GFF4553 0.82 -0.5 190,851 - GFF4553 0.82 +0.5 190,851 - GFF4553 0.82 -0.9 190,851 - GFF4553 0.82 -1.0 190,851 - GFF4553 0.82 +0.4 190,851 - GFF4553 0.82 -0.8 190,851 - GFF4553 0.82 -1.2 190,851 - GFF4553 0.82 -0.5 190,851 - GFF4553 0.82 -0.8 190,851 - GFF4553 0.82 +1.0 190,851 - GFF4553 0.82 +0.5 190,851 - GFF4553 0.82 -0.5 190,851 - GFF4553 0.82 -0.2 190,851 - GFF4553 0.82 -0.2 190,851 - GFF4553 0.82 +1.0 190,851 - GFF4553 0.82 -0.8 190,851 - GFF4553 0.82 -0.1 190,851 - GFF4553 0.82 +1.4 190,851 - GFF4553 0.82 -0.6 190,851 - GFF4553 0.82 -1.4 190,851 - GFF4553 0.82 -0.4 190,851 - GFF4553 0.82 -1.8 190,851 - GFF4553 0.82 -0.3 190,851 - GFF4553 0.82 +0.6 190,851 - GFF4553 0.82 +0.3 190,851 - GFF4553 0.82 -0.9 190,851 - GFF4553 0.82 -1.2 190,851 - GFF4553 0.82 -0.7 190,851 - GFF4553 0.82 -0.6 190,851 - GFF4553 0.82 -0.5 190,851 - GFF4553 0.82 -0.8 190,851 - GFF4553 0.82 -0.4 190,851 - GFF4553 0.82 -1.5 190,851 - GFF4553 0.82 -0.4 190,851 - GFF4553 0.82 +0.9 191,073 + +0.4 191,073 + +0.0 191,074 - +0.8 191,074 - -1.8 191,074 - +0.9 191,074 - +1.0 191,086 + +0.8 191,086 + +0.0 191,378 + GFF4554 0.32 -0.1 191,378 + GFF4554 0.32 -0.7 191,378 + GFF4554 0.32 +0.9 191,378 + GFF4554 0.32 -0.4 191,378 + GFF4554 0.32 -1.0 191,378 + GFF4554 0.32 +2.2 191,378 + GFF4554 0.32 -1.5 191,378 + GFF4554 0.32 -0.5 191,378 + GFF4554 0.32 +0.2 191,378 + GFF4554 0.32 +0.1 191,378 + GFF4554 0.32 +0.9 191,378 + GFF4554 0.32 -0.9 191,378 + GFF4554 0.32 +0.3 191,379 - GFF4554 0.32 -0.6 191,379 - GFF4554 0.32 -0.2 191,379 - GFF4554 0.32 -0.1 191,379 - GFF4554 0.32 -0.6 191,379 - GFF4554 0.32 -1.2 191,379 - GFF4554 0.32 +0.0 191,379 - GFF4554 0.32 -0.6 191,379 - GFF4554 0.32 +0.0 191,379 - GFF4554 0.32 +0.0 191,379 - GFF4554 0.32 -0.2 191,381 + GFF4554 0.33 -0.4 191,382 - GFF4554 0.33 -0.1 191,382 - GFF4554 0.33 -0.8 191,441 + GFF4554 0.39 -1.0 191,442 - GFF4554 0.40 -0.2 191,442 - GFF4554 0.40 -0.1 191,961 + -0.5 191,961 + -1.3 191,961 + -0.4 191,962 - +0.5 191,962 - -0.7 191,962 - -1.0 191,962 - -0.6 191,962 - +1.2 192,005 + +0.2 192,005 + +1.4 192,005 + -2.0 192,006 - +0.3 192,006 - -0.1 192,006 - -0.2
Or see this region's nucleotide sequence