Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4486 and GFF4487 are separated by 698 nucleotides GFF4487 and GFF4488 are separated by 134 nucleotides
GFF4486 - DksA family protein PA5536 (no Zn-finger), at 130,080 to 130,754
GFF4486
GFF4487 - putative secreted protein, at 131,453 to 132,931
GFF4487
GFF4488 - Metal-binding GTPase YjiA, at 133,066 to 134,121
GFF4488
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.182 kb on + strand at 131.182 kb on + strand at 131.182 kb on + strand at 131.182 kb on + strand at 131.182 kb on + strand at 131.182 kb on + strand at 131.182 kb on + strand at 131.183 kb on - strand at 131.183 kb on - strand at 131.183 kb on - strand at 131.183 kb on - strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.184 kb on + strand at 131.185 kb on - strand at 131.185 kb on - strand at 131.185 kb on - strand at 131.185 kb on - strand at 131.185 kb on - strand at 131.185 kb on - strand at 131.185 kb on - strand at 131.185 kb on - strand at 131.255 kb on + strand at 131.255 kb on + strand at 131.255 kb on + strand at 131.255 kb on + strand at 131.256 kb on - strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.283 kb on + strand at 131.284 kb on - strand at 131.284 kb on - strand at 131.284 kb on - strand at 131.284 kb on - strand at 131.284 kb on - strand at 131.284 kb on - strand at 131.286 kb on - strand at 131.286 kb on - strand at 131.286 kb on - strand at 131.335 kb on + strand at 131.335 kb on + strand at 131.335 kb on + strand at 131.335 kb on + strand at 131.336 kb on - strand at 131.336 kb on - strand at 131.336 kb on - strand at 131.451 kb on + strand at 131.451 kb on + strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.486 kb on + strand at 131.486 kb on + strand at 131.532 kb on - strand at 131.594 kb on + strand at 131.594 kb on + strand at 131.594 kb on + strand at 131.595 kb on - strand at 131.595 kb on - strand at 131.595 kb on - strand at 132.051 kb on - strand, within GFF4487 at 132.326 kb on + strand, within GFF4487 at 132.326 kb on + strand, within GFF4487 at 132.327 kb on - strand, within GFF4487 at 132.327 kb on - strand, within GFF4487 at 132.327 kb on - strand, within GFF4487 at 132.428 kb on + strand, within GFF4487 at 132.429 kb on - strand, within GFF4487 at 132.429 kb on - strand, within GFF4487 at 132.429 kb on - strand, within GFF4487 at 132.429 kb on - strand, within GFF4487 at 132.563 kb on + strand, within GFF4487 at 132.563 kb on + strand, within GFF4487 at 132.563 kb on + strand, within GFF4487 at 132.564 kb on - strand, within GFF4487 at 132.564 kb on - strand, within GFF4487 at 132.564 kb on - strand, within GFF4487 at 132.564 kb on - strand, within GFF4487 at 132.629 kb on + strand, within GFF4487 at 132.629 kb on + strand, within GFF4487 at 132.629 kb on + strand, within GFF4487 at 132.629 kb on + strand, within GFF4487 at 132.630 kb on - strand, within GFF4487 at 132.630 kb on - strand, within GFF4487 at 132.630 kb on - strand, within GFF4487 at 132.630 kb on - strand, within GFF4487 at 132.630 kb on - strand, within GFF4487 at 132.929 kb on + strand at 132.929 kb on + strand at 132.929 kb on + strand at 132.929 kb on + strand at 132.929 kb on + strand at 132.929 kb on + strand at 132.930 kb on - strand at 132.930 kb on - strand at 132.930 kb on - strand at 132.930 kb on - strand at 132.930 kb on - strand at 132.930 kb on - strand at 132.930 kb on - strand at 132.930 kb on - strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.937 kb on + strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 132.938 kb on - strand at 133.253 kb on + strand, within GFF4488 at 133.253 kb on + strand, within GFF4488 at 133.253 kb on + strand, within GFF4488 at 133.253 kb on + strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.254 kb on - strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.274 kb on + strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.275 kb on - strand, within GFF4488 at 133.340 kb on + strand, within GFF4488 at 133.340 kb on + strand, within GFF4488 at 133.340 kb on + strand, within GFF4488 at 133.340 kb on + strand, within GFF4488 at 133.340 kb on + strand, within GFF4488 at 133.340 kb on + strand, within GFF4488 at 133.341 kb on - strand, within GFF4488 at 133.341 kb on - strand, within GFF4488 at 133.341 kb on - strand, within GFF4488 at 133.341 kb on - strand, within GFF4488 at 133.341 kb on - strand, within GFF4488 at 133.341 kb on - strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.757 kb on + strand, within GFF4488 at 133.758 kb on - strand, within GFF4488 at 133.758 kb on - strand, within GFF4488 at 133.758 kb on - strand, within GFF4488 at 133.758 kb on - strand, within GFF4488
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 131,182 + +1.3 131,182 + +0.0 131,182 + -0.4 131,182 + +0.9 131,182 + +2.0 131,182 + +0.0 131,182 + +1.6 131,183 - -1.1 131,183 - +0.6 131,183 - +0.3 131,183 - -0.2 131,184 + -0.7 131,184 + +0.3 131,184 + +0.2 131,184 + -0.2 131,184 + +1.2 131,184 + +0.3 131,184 + +0.8 131,184 + -1.3 131,184 + +0.3 131,184 + -0.1 131,185 - -2.4 131,185 - -0.8 131,185 - -0.5 131,185 - -0.4 131,185 - -0.5 131,185 - +0.0 131,185 - -0.3 131,185 - +0.3 131,255 + -0.1 131,255 + -0.4 131,255 + +0.3 131,255 + +1.3 131,256 - -0.1 131,283 + +1.3 131,283 + -0.2 131,283 + +0.4 131,283 + -0.2 131,283 + +0.3 131,283 + -0.7 131,283 + +0.4 131,283 + +0.0 131,283 + +0.4 131,283 + -0.4 131,283 + -0.3 131,283 + -0.4 131,283 + +0.0 131,284 - -0.3 131,284 - -0.3 131,284 - -0.0 131,284 - +0.1 131,284 - +0.5 131,284 - -0.3 131,286 - -1.0 131,286 - +0.9 131,286 - -0.9 131,335 + -0.9 131,335 + -0.8 131,335 + +0.2 131,335 + +1.0 131,336 - -0.4 131,336 - +0.1 131,336 - -0.2 131,451 + -1.8 131,451 + -0.3 131,452 - -1.2 131,452 - -2.0 131,452 - -0.4 131,452 - +2.3 131,452 - -0.3 131,452 - -2.0 131,486 + -0.1 131,486 + -1.8 131,532 - -1.2 131,594 + -0.3 131,594 + -0.6 131,594 + +1.1 131,595 - +1.6 131,595 - -0.2 131,595 - +0.3 132,051 - GFF4487 0.40 +0.4 132,326 + GFF4487 0.59 +0.4 132,326 + GFF4487 0.59 +1.1 132,327 - GFF4487 0.59 -0.3 132,327 - GFF4487 0.59 -1.0 132,327 - GFF4487 0.59 +0.2 132,428 + GFF4487 0.66 +0.1 132,429 - GFF4487 0.66 -0.3 132,429 - GFF4487 0.66 -0.3 132,429 - GFF4487 0.66 -0.1 132,429 - GFF4487 0.66 +0.3 132,563 + GFF4487 0.75 -0.6 132,563 + GFF4487 0.75 -0.2 132,563 + GFF4487 0.75 +0.8 132,564 - GFF4487 0.75 -0.3 132,564 - GFF4487 0.75 +0.8 132,564 - GFF4487 0.75 +0.6 132,564 - GFF4487 0.75 -0.1 132,629 + GFF4487 0.80 -0.2 132,629 + GFF4487 0.80 +0.0 132,629 + GFF4487 0.80 +0.1 132,629 + GFF4487 0.80 -0.5 132,630 - GFF4487 0.80 -0.1 132,630 - GFF4487 0.80 -2.4 132,630 - GFF4487 0.80 -0.3 132,630 - GFF4487 0.80 +1.6 132,630 - GFF4487 0.80 +0.5 132,929 + -1.1 132,929 + -0.0 132,929 + -0.1 132,929 + +0.9 132,929 + +0.1 132,929 + -0.8 132,930 - -0.2 132,930 - -0.5 132,930 - -0.4 132,930 - +1.3 132,930 - -0.3 132,930 - -0.2 132,930 - +0.0 132,930 - -0.3 132,937 + -0.1 132,937 + -0.1 132,937 + -1.1 132,937 + -0.1 132,937 + -0.9 132,937 + +0.4 132,937 + -1.1 132,937 + +0.8 132,937 + +0.0 132,937 + -0.5 132,937 + +0.5 132,937 + -0.4 132,937 + -0.3 132,937 + +0.0 132,937 + -0.4 132,938 - -0.4 132,938 - -0.7 132,938 - +0.6 132,938 - +0.3 132,938 - +0.1 132,938 - -0.3 132,938 - +0.2 132,938 - -0.8 132,938 - -0.5 132,938 - +0.6 132,938 - -0.1 132,938 - -0.3 132,938 - +0.3 132,938 - +0.5 132,938 - +0.7 132,938 - -0.3 132,938 - -1.0 132,938 - -0.1 132,938 - -1.2 132,938 - -0.6 132,938 - +0.0 132,938 - -0.5 132,938 - -0.6 133,253 + GFF4488 0.18 +0.0 133,253 + GFF4488 0.18 -0.2 133,253 + GFF4488 0.18 -1.2 133,253 + GFF4488 0.18 +0.0 133,254 - GFF4488 0.18 -0.5 133,254 - GFF4488 0.18 -0.2 133,254 - GFF4488 0.18 +0.8 133,254 - GFF4488 0.18 +0.9 133,254 - GFF4488 0.18 -0.7 133,254 - GFF4488 0.18 +0.6 133,254 - GFF4488 0.18 -0.3 133,254 - GFF4488 0.18 +0.8 133,274 + GFF4488 0.20 +0.8 133,274 + GFF4488 0.20 -0.4 133,274 + GFF4488 0.20 -0.6 133,274 + GFF4488 0.20 -0.3 133,274 + GFF4488 0.20 -0.3 133,274 + GFF4488 0.20 +0.3 133,274 + GFF4488 0.20 +0.6 133,274 + GFF4488 0.20 -0.8 133,275 - GFF4488 0.20 -0.2 133,275 - GFF4488 0.20 -0.7 133,275 - GFF4488 0.20 -0.7 133,275 - GFF4488 0.20 -1.0 133,275 - GFF4488 0.20 -0.3 133,275 - GFF4488 0.20 -1.8 133,275 - GFF4488 0.20 -0.1 133,275 - GFF4488 0.20 -0.7 133,275 - GFF4488 0.20 -0.1 133,275 - GFF4488 0.20 -0.5 133,340 + GFF4488 0.26 +0.2 133,340 + GFF4488 0.26 -0.4 133,340 + GFF4488 0.26 +0.2 133,340 + GFF4488 0.26 +0.0 133,340 + GFF4488 0.26 -1.2 133,340 + GFF4488 0.26 -0.1 133,341 - GFF4488 0.26 +0.5 133,341 - GFF4488 0.26 -1.4 133,341 - GFF4488 0.26 +0.3 133,341 - GFF4488 0.26 -0.2 133,341 - GFF4488 0.26 -0.6 133,341 - GFF4488 0.26 -0.6 133,757 + GFF4488 0.65 +0.3 133,757 + GFF4488 0.65 +0.6 133,757 + GFF4488 0.65 +0.2 133,757 + GFF4488 0.65 +1.6 133,757 + GFF4488 0.65 -1.8 133,757 + GFF4488 0.65 -0.0 133,757 + GFF4488 0.65 -1.5 133,757 + GFF4488 0.65 -0.7 133,757 + GFF4488 0.65 +0.2 133,757 + GFF4488 0.65 +0.7 133,757 + GFF4488 0.65 -0.2 133,757 + GFF4488 0.65 -1.7 133,757 + GFF4488 0.65 +0.3 133,757 + GFF4488 0.65 -1.1 133,757 + GFF4488 0.65 -0.5 133,757 + GFF4488 0.65 +0.8 133,758 - GFF4488 0.66 -0.1 133,758 - GFF4488 0.66 -1.6 133,758 - GFF4488 0.66 +0.3 133,758 - GFF4488 0.66 -0.4
Or see this region's nucleotide sequence