Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4460 and GFF4461 are separated by 16 nucleotides GFF4461 and GFF4462 are separated by 66 nucleotides GFF4462 and GFF4463 are separated by 1 nucleotides
GFF4460 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 100,481 to 101,470
GFF4460
GFF4461 - hypothetical protein, at 101,487 to 103,649
GFF4461
GFF4462 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 103,716 to 104,264
GFF4462
GFF4463 - alpha-methyl-L-serine aldolase, at 104,266 to 105,534
GFF4463
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 100.898 kb on + strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 101.000 kb on + strand, within GFF4460 at 101.001 kb on - strand, within GFF4460 at 101.457 kb on - strand at 101.457 kb on - strand at 101.457 kb on - strand at 101.761 kb on + strand, within GFF4461 at 101.891 kb on - strand, within GFF4461 at 101.891 kb on - strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.074 kb on - strand, within GFF4461 at 102.074 kb on - strand, within GFF4461 at 102.459 kb on + strand, within GFF4461 at 102.514 kb on + strand, within GFF4461 at 102.514 kb on + strand, within GFF4461 at 102.514 kb on + strand, within GFF4461 at 102.514 kb on + strand, within GFF4461 at 102.563 kb on - strand, within GFF4461 at 102.563 kb on - strand, within GFF4461 at 102.703 kb on + strand, within GFF4461 at 102.704 kb on - strand, within GFF4461 at 103.267 kb on + strand, within GFF4461 at 103.563 kb on + strand at 103.563 kb on + strand at 103.564 kb on - strand at 103.619 kb on - strand at 103.702 kb on + strand at 103.711 kb on + strand at 103.711 kb on + strand at 103.711 kb on + strand at 103.711 kb on + strand at 103.712 kb on - strand at 103.712 kb on - strand at 103.712 kb on - strand at 103.712 kb on - strand at 103.712 kb on - strand at 103.712 kb on - strand at 103.795 kb on - strand, within GFF4462 at 104.025 kb on + strand, within GFF4462 at 104.241 kb on + strand at 104.241 kb on + strand at 104.279 kb on + strand at 104.279 kb on + strand at 104.279 kb on + strand at 104.280 kb on - strand at 104.280 kb on - strand at 104.280 kb on - strand at 104.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 100,898 + GFF4460 0.42 -0.4 100,899 - GFF4460 0.42 +0.2 100,899 - GFF4460 0.42 +1.2 100,899 - GFF4460 0.42 +0.3 100,899 - GFF4460 0.42 +0.6 101,000 + GFF4460 0.52 +0.3 101,001 - GFF4460 0.53 +0.1 101,457 - -0.3 101,457 - -0.4 101,457 - -0.2 101,761 + GFF4461 0.13 +0.6 101,891 - GFF4461 0.19 -0.7 101,891 - GFF4461 0.19 -0.1 102,073 + GFF4461 0.27 -0.4 102,073 + GFF4461 0.27 +1.0 102,073 + GFF4461 0.27 -1.8 102,073 + GFF4461 0.27 -0.6 102,074 - GFF4461 0.27 -0.6 102,074 - GFF4461 0.27 -0.4 102,459 + GFF4461 0.45 +0.3 102,514 + GFF4461 0.47 -1.0 102,514 + GFF4461 0.47 -1.6 102,514 + GFF4461 0.47 -0.9 102,514 + GFF4461 0.47 +0.8 102,563 - GFF4461 0.50 +0.3 102,563 - GFF4461 0.50 -0.0 102,703 + GFF4461 0.56 -0.1 102,704 - GFF4461 0.56 +0.2 103,267 + GFF4461 0.82 -0.7 103,563 + +0.4 103,563 + -0.6 103,564 - +1.6 103,619 - -0.6 103,702 + -0.7 103,711 + -0.2 103,711 + -0.8 103,711 + -0.9 103,711 + +0.1 103,712 - -1.4 103,712 - -0.7 103,712 - -1.0 103,712 - +0.4 103,712 - -0.6 103,712 - +0.9 103,795 - GFF4462 0.14 +0.9 104,025 + GFF4462 0.56 -0.9 104,241 + +0.3 104,241 + -0.0 104,279 + +0.4 104,279 + -0.3 104,279 + -0.2 104,280 - +0.9 104,280 - -0.1 104,280 - -0.8 104,280 - -0.3
Or see this region's nucleotide sequence