Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4384 and GFF4385 are separated by 265 nucleotides GFF4385 and GFF4386 overlap by 4 nucleotides GFF4386 and GFF4387 overlap by 4 nucleotides GFF4387 and GFF4388 overlap by 4 nucleotides
GFF4384 - Plasmid replication initiator protein, at 13,515 to 14,372
GFF4384
GFF4385 - ParA-like protein, at 14,638 to 15,276
GFF4385
GFF4386 - FIG00457034: hypothetical protein, at 15,273 to 15,557
GFF4386
GFF4387 - Glycosidases, at 15,554 to 16,099
GFF4387
GFF4388 - Type IV secretory pathway, protease TraF, at 16,096 to 16,695
GFF4388
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.741 kb on + strand, within GFF4384 at 13.742 kb on - strand, within GFF4384 at 13.822 kb on + strand, within GFF4384 at 13.822 kb on + strand, within GFF4384 at 13.837 kb on - strand, within GFF4384 at 13.881 kb on + strand, within GFF4384 at 13.881 kb on + strand, within GFF4384 at 13.881 kb on + strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 13.882 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.056 kb on - strand, within GFF4384 at 14.103 kb on + strand, within GFF4384 at 14.103 kb on + strand, within GFF4384 at 14.104 kb on - strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.139 kb on + strand, within GFF4384 at 14.248 kb on - strand, within GFF4384 at 14.289 kb on + strand at 14.290 kb on - strand at 14.290 kb on - strand at 14.290 kb on - strand at 14.290 kb on - strand at 14.370 kb on + strand at 14.370 kb on + strand at 14.370 kb on + strand at 14.370 kb on + strand at 14.371 kb on - strand at 14.404 kb on - strand at 14.404 kb on - strand at 14.404 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.437 kb on - strand at 14.442 kb on + strand at 14.442 kb on + strand at 14.442 kb on + strand at 14.443 kb on - strand at 14.443 kb on - strand at 14.443 kb on - strand at 14.443 kb on - strand at 14.450 kb on + strand at 14.450 kb on + strand at 14.450 kb on + strand at 14.451 kb on - strand at 14.451 kb on - strand at 14.451 kb on - strand at 14.451 kb on - strand at 14.460 kb on - strand at 14.463 kb on - strand at 14.482 kb on - strand at 14.506 kb on + strand at 14.506 kb on + strand at 14.506 kb on + strand at 14.506 kb on + strand at 14.507 kb on - strand at 14.507 kb on - strand at 14.515 kb on + strand at 14.519 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.525 kb on + strand at 14.526 kb on - strand at 14.526 kb on - strand at 14.526 kb on - strand at 14.526 kb on - strand at 14.526 kb on - strand at 14.529 kb on + strand at 14.529 kb on + strand at 14.530 kb on - strand at 14.530 kb on - strand at 14.530 kb on - strand at 14.530 kb on - strand at 14.536 kb on + strand at 14.536 kb on + strand at 14.537 kb on - strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.539 kb on + strand at 14.540 kb on - strand at 14.540 kb on - strand at 14.540 kb on - strand at 14.970 kb on + strand, within GFF4385 at 14.970 kb on + strand, within GFF4385 at 14.970 kb on + strand, within GFF4385 at 14.970 kb on + strand, within GFF4385 at 14.970 kb on + strand, within GFF4385 at 14.970 kb on + strand, within GFF4385 at 14.970 kb on + strand, within GFF4385 at 14.977 kb on + strand, within GFF4385 at 14.977 kb on + strand, within GFF4385 at 14.977 kb on + strand, within GFF4385 at 14.977 kb on + strand, within GFF4385 at 15.078 kb on + strand, within GFF4385 at 15.078 kb on + strand, within GFF4385 at 15.078 kb on + strand, within GFF4385 at 15.078 kb on + strand, within GFF4385 at 15.079 kb on - strand, within GFF4385 at 15.079 kb on - strand, within GFF4385 at 15.079 kb on - strand, within GFF4385 at 15.079 kb on - strand, within GFF4385 at 15.079 kb on - strand, within GFF4385 at 15.079 kb on - strand, within GFF4385 at 15.311 kb on + strand, within GFF4386 at 15.311 kb on + strand, within GFF4386 at 15.311 kb on + strand, within GFF4386 at 15.312 kb on - strand, within GFF4386 at 15.312 kb on - strand, within GFF4386 at 15.408 kb on + strand, within GFF4386 at 15.408 kb on + strand, within GFF4386 at 15.408 kb on + strand, within GFF4386 at 15.408 kb on + strand, within GFF4386 at 15.408 kb on + strand, within GFF4386 at 15.408 kb on + strand, within GFF4386 at 15.409 kb on - strand, within GFF4386 at 15.409 kb on - strand, within GFF4386 at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.606 kb on + strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.607 kb on - strand at 15.619 kb on - strand, within GFF4387 at 15.692 kb on + strand, within GFF4387 at 15.692 kb on + strand, within GFF4387 at 15.692 kb on + strand, within GFF4387 at 15.692 kb on + strand, within GFF4387 at 15.692 kb on + strand, within GFF4387 at 15.693 kb on - strand, within GFF4387 at 15.693 kb on - strand, within GFF4387 at 15.693 kb on - strand, within GFF4387 at 15.693 kb on - strand, within GFF4387 at 15.693 kb on - strand, within GFF4387 at 15.693 kb on - strand, within GFF4387 at 15.693 kb on - strand, within GFF4387 at 15.804 kb on - strand, within GFF4387 at 15.998 kb on + strand, within GFF4387 at 15.998 kb on + strand, within GFF4387 at 15.999 kb on - strand, within GFF4387 at 16.049 kb on + strand at 16.049 kb on + strand at 16.049 kb on + strand at 16.049 kb on + strand at 16.049 kb on + strand at 16.049 kb on + strand at 16.049 kb on + strand at 16.049 kb on + strand at 16.050 kb on - strand at 16.050 kb on - strand at 16.050 kb on - strand at 16.050 kb on - strand at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388 at 16.250 kb on - strand, within GFF4388
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,741 + GFF4384 0.26 -1.7 13,742 - GFF4384 0.26 -0.2 13,822 + GFF4384 0.36 -0.8 13,822 + GFF4384 0.36 -0.3 13,837 - GFF4384 0.38 +0.6 13,881 + GFF4384 0.43 -0.4 13,881 + GFF4384 0.43 +0.1 13,881 + GFF4384 0.43 -0.3 13,882 - GFF4384 0.43 +0.3 13,882 - GFF4384 0.43 +0.3 13,882 - GFF4384 0.43 -0.1 13,882 - GFF4384 0.43 -0.6 14,056 - GFF4384 0.63 +0.3 14,056 - GFF4384 0.63 +2.2 14,056 - GFF4384 0.63 +0.3 14,056 - GFF4384 0.63 -0.3 14,056 - GFF4384 0.63 +0.0 14,056 - GFF4384 0.63 -1.7 14,056 - GFF4384 0.63 -1.2 14,056 - GFF4384 0.63 -1.8 14,056 - GFF4384 0.63 -0.3 14,056 - GFF4384 0.63 -0.2 14,056 - GFF4384 0.63 +1.0 14,056 - GFF4384 0.63 -0.3 14,056 - GFF4384 0.63 -0.3 14,103 + GFF4384 0.69 +0.5 14,103 + GFF4384 0.69 -1.6 14,104 - GFF4384 0.69 +0.0 14,139 + GFF4384 0.73 -0.7 14,139 + GFF4384 0.73 +1.6 14,139 + GFF4384 0.73 +0.6 14,139 + GFF4384 0.73 -0.6 14,139 + GFF4384 0.73 +0.3 14,248 - GFF4384 0.85 -0.3 14,289 + +0.4 14,290 - -0.1 14,290 - -0.5 14,290 - +0.2 14,290 - -0.3 14,370 + -0.3 14,370 + +0.1 14,370 + +1.3 14,370 + +0.5 14,371 - -0.6 14,404 - +0.3 14,404 - -0.2 14,404 - +0.3 14,437 - +0.0 14,437 - -0.4 14,437 - -0.1 14,437 - -1.4 14,437 - -0.3 14,442 + -0.5 14,442 + +0.6 14,442 + -0.5 14,443 - -0.5 14,443 - +0.1 14,443 - -0.2 14,443 - +0.7 14,450 + -0.7 14,450 + +0.4 14,450 + +0.2 14,451 - -0.7 14,451 - -0.4 14,451 - -1.0 14,451 - -0.9 14,460 - +1.0 14,463 - -1.2 14,482 - +0.6 14,506 + -0.1 14,506 + -0.8 14,506 + -0.5 14,506 + +1.5 14,507 - +0.9 14,507 - -2.1 14,515 + +1.2 14,519 + -0.3 14,525 + -0.1 14,525 + -0.7 14,525 + +0.9 14,525 + -1.0 14,525 + -0.1 14,525 + +0.8 14,525 + -0.4 14,525 + +0.9 14,525 + +0.2 14,525 + +0.0 14,525 + +0.1 14,525 + +1.2 14,525 + -0.3 14,525 + -0.4 14,526 - +0.4 14,526 - -0.6 14,526 - -0.4 14,526 - -0.1 14,526 - -1.4 14,529 + -0.1 14,529 + +0.0 14,530 - +0.8 14,530 - +0.5 14,530 - +0.0 14,530 - -0.3 14,536 + +0.2 14,536 + -0.4 14,537 - -1.6 14,539 + -0.4 14,539 + +0.3 14,539 + +0.5 14,539 + +0.4 14,539 + +0.1 14,539 + +0.0 14,539 + -1.4 14,539 + +0.3 14,539 + +1.3 14,539 + -0.3 14,540 - +0.6 14,540 - -0.2 14,540 - +1.2 14,970 + GFF4385 0.52 -1.0 14,970 + GFF4385 0.52 +1.6 14,970 + GFF4385 0.52 +0.0 14,970 + GFF4385 0.52 -0.2 14,970 + GFF4385 0.52 -0.0 14,970 + GFF4385 0.52 +0.4 14,970 + GFF4385 0.52 -0.2 14,977 + GFF4385 0.53 +0.0 14,977 + GFF4385 0.53 -1.0 14,977 + GFF4385 0.53 -0.8 14,977 + GFF4385 0.53 +0.1 15,078 + GFF4385 0.69 +0.5 15,078 + GFF4385 0.69 -0.6 15,078 + GFF4385 0.69 -0.2 15,078 + GFF4385 0.69 +0.1 15,079 - GFF4385 0.69 +0.8 15,079 - GFF4385 0.69 +0.4 15,079 - GFF4385 0.69 -0.3 15,079 - GFF4385 0.69 +0.4 15,079 - GFF4385 0.69 -0.2 15,079 - GFF4385 0.69 -1.4 15,311 + GFF4386 0.13 +0.0 15,311 + GFF4386 0.13 +0.2 15,311 + GFF4386 0.13 +0.1 15,312 - GFF4386 0.14 +0.8 15,312 - GFF4386 0.14 +0.0 15,408 + GFF4386 0.47 +0.1 15,408 + GFF4386 0.47 -0.3 15,408 + GFF4386 0.47 +1.4 15,408 + GFF4386 0.47 +1.6 15,408 + GFF4386 0.47 -0.5 15,408 + GFF4386 0.47 +0.0 15,409 - GFF4386 0.48 -1.4 15,409 - GFF4386 0.48 +0.5 15,606 + -1.1 15,606 + +0.6 15,606 + -0.0 15,606 + -0.8 15,606 + -0.3 15,606 + +1.0 15,606 + -0.5 15,606 + +0.6 15,606 + -0.4 15,606 + +0.4 15,606 + -1.0 15,606 + -0.3 15,606 + -0.3 15,606 + -0.1 15,607 - -0.6 15,607 - -1.3 15,607 - -0.1 15,607 - -0.4 15,607 - -0.6 15,607 - -0.1 15,607 - -0.4 15,607 - -0.7 15,607 - +0.9 15,619 - GFF4387 0.12 +0.1 15,692 + GFF4387 0.25 -0.1 15,692 + GFF4387 0.25 +0.1 15,692 + GFF4387 0.25 +0.1 15,692 + GFF4387 0.25 -0.0 15,692 + GFF4387 0.25 -0.3 15,693 - GFF4387 0.25 -0.5 15,693 - GFF4387 0.25 +0.3 15,693 - GFF4387 0.25 -0.6 15,693 - GFF4387 0.25 -0.8 15,693 - GFF4387 0.25 -0.2 15,693 - GFF4387 0.25 -0.9 15,693 - GFF4387 0.25 -0.6 15,804 - GFF4387 0.46 -0.6 15,998 + GFF4387 0.81 -1.6 15,998 + GFF4387 0.81 -0.4 15,999 - GFF4387 0.82 +0.0 16,049 + +0.3 16,049 + -0.0 16,049 + +1.0 16,049 + +0.1 16,049 + -1.0 16,049 + +0.4 16,049 + -0.9 16,049 + -1.6 16,050 - -0.5 16,050 - -0.7 16,050 - -0.4 16,050 - +0.0 16,250 - GFF4388 0.26 -1.3 16,250 - GFF4388 0.26 -0.4 16,250 - GFF4388 0.26 -0.0 16,250 - GFF4388 0.26 -0.3 16,250 - GFF4388 0.26 +1.0 16,250 - GFF4388 0.26 -0.3 16,250 - GFF4388 0.26 -0.0 16,250 - GFF4388 0.26 -0.4 16,250 - GFF4388 0.26 +0.1 16,250 - GFF4388 0.26 +0.1 16,250 - GFF4388 0.26 -0.2 16,250 - GFF4388 0.26 +1.2 16,250 - GFF4388 0.26 -0.5 16,250 - GFF4388 0.26 +0.9
Or see this region's nucleotide sequence