Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4137 and GFF4138 are separated by 46 nucleotides GFF4138 and GFF4139 are separated by 6 nucleotides
GFF4137 - Methionine ABC transporter substrate-binding protein, at 46,258 to 47,070
GFF4137
GFF4138 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 47,117 to 48,709
GFF4138
GFF4139 - probable epoxide hydrolase, at 48,716 to 49,645
GFF4139
Position (kb) 47
48
49 Strain fitness (log2 ratio) -1
0
1 at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.168 kb on + strand at 46.169 kb on - strand at 46.169 kb on - strand at 46.230 kb on + strand at 46.231 kb on - strand at 46.457 kb on - strand, within GFF4137 at 46.457 kb on - strand, within GFF4137 at 46.457 kb on - strand, within GFF4137 at 47.041 kb on + strand at 47.041 kb on + strand at 47.096 kb on - strand at 47.399 kb on + strand, within GFF4138 at 47.399 kb on + strand, within GFF4138 at 47.399 kb on + strand, within GFF4138 at 47.672 kb on + strand, within GFF4138 at 47.973 kb on - strand, within GFF4138 at 47.973 kb on - strand, within GFF4138 at 48.144 kb on - strand, within GFF4138 at 48.236 kb on + strand, within GFF4138 at 48.320 kb on + strand, within GFF4138 at 48.336 kb on - strand, within GFF4138 at 48.336 kb on - strand, within GFF4138 at 48.350 kb on + strand, within GFF4138 at 48.651 kb on - strand at 48.651 kb on - strand at 48.814 kb on - strand, within GFF4139 at 48.909 kb on - strand, within GFF4139 at 49.116 kb on + strand, within GFF4139 at 49.470 kb on + strand, within GFF4139 at 49.471 kb on - strand, within GFF4139
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 46,168 + +0.1 46,168 + -0.4 46,168 + +0.2 46,168 + +0.3 46,168 + -0.0 46,168 + +0.4 46,169 - -0.5 46,169 - -0.2 46,230 + -0.3 46,231 - +0.6 46,457 - GFF4137 0.24 -0.1 46,457 - GFF4137 0.24 -1.2 46,457 - GFF4137 0.24 -0.1 47,041 + -0.6 47,041 + -1.6 47,096 - -0.7 47,399 + GFF4138 0.18 -0.3 47,399 + GFF4138 0.18 +0.1 47,399 + GFF4138 0.18 -0.8 47,672 + GFF4138 0.35 -0.1 47,973 - GFF4138 0.54 -0.8 47,973 - GFF4138 0.54 -0.4 48,144 - GFF4138 0.64 -0.5 48,236 + GFF4138 0.70 +1.0 48,320 + GFF4138 0.76 -1.4 48,336 - GFF4138 0.77 -0.4 48,336 - GFF4138 0.77 -0.7 48,350 + GFF4138 0.77 -0.0 48,651 - -0.0 48,651 - +1.0 48,814 - GFF4139 0.11 -0.1 48,909 - GFF4139 0.21 -0.1 49,116 + GFF4139 0.43 -0.4 49,470 + GFF4139 0.81 -0.0 49,471 - GFF4139 0.81 -1.1
Or see this region's nucleotide sequence