Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4128 and GFF4129 overlap by 4 nucleotides GFF4129 and GFF4130 overlap by 4 nucleotides
GFF4128 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 31,667 to 33,295
GFF4128
GFF4129 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 33,292 to 34,941
GFF4129
GFF4130 - Amidase family protein SACE_5032, at 34,938 to 36,458
GFF4130
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1 at 32.317 kb on - strand, within GFF4128 at 32.428 kb on + strand, within GFF4128 at 32.436 kb on + strand, within GFF4128 at 32.437 kb on - strand, within GFF4128 at 32.601 kb on + strand, within GFF4128 at 32.601 kb on + strand, within GFF4128 at 32.640 kb on + strand, within GFF4128 at 32.641 kb on - strand, within GFF4128 at 32.740 kb on - strand, within GFF4128 at 32.829 kb on + strand, within GFF4128 at 32.829 kb on + strand, within GFF4128 at 32.830 kb on - strand, within GFF4128 at 32.889 kb on + strand, within GFF4128 at 33.052 kb on - strand, within GFF4128 at 33.052 kb on - strand, within GFF4128 at 33.354 kb on + strand at 33.354 kb on + strand at 33.657 kb on - strand, within GFF4129 at 33.672 kb on - strand, within GFF4129 at 33.737 kb on + strand, within GFF4129 at 33.738 kb on - strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.227 kb on - strand, within GFF4129 at 34.227 kb on - strand, within GFF4129 at 34.247 kb on + strand, within GFF4129 at 34.364 kb on + strand, within GFF4129 at 34.364 kb on + strand, within GFF4129 at 34.607 kb on + strand, within GFF4129 at 34.608 kb on - strand, within GFF4129 at 34.800 kb on - strand at 34.987 kb on + strand at 34.988 kb on - strand at 35.039 kb on - strand at 35.198 kb on - strand, within GFF4130 at 35.480 kb on - strand, within GFF4130 at 35.864 kb on - strand, within GFF4130
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 32,317 - GFF4128 0.40 +1.0 32,428 + GFF4128 0.47 -0.6 32,436 + GFF4128 0.47 -1.8 32,437 - GFF4128 0.47 -0.3 32,601 + GFF4128 0.57 -0.3 32,601 + GFF4128 0.57 +0.3 32,640 + GFF4128 0.60 +0.6 32,641 - GFF4128 0.60 +1.6 32,740 - GFF4128 0.66 -1.0 32,829 + GFF4128 0.71 -1.2 32,829 + GFF4128 0.71 +0.1 32,830 - GFF4128 0.71 -0.2 32,889 + GFF4128 0.75 +1.0 33,052 - GFF4128 0.85 -0.3 33,052 - GFF4128 0.85 -0.5 33,354 + -1.8 33,354 + +1.0 33,657 - GFF4129 0.22 -0.0 33,672 - GFF4129 0.23 -2.5 33,737 + GFF4129 0.27 -0.6 33,738 - GFF4129 0.27 -0.6 34,226 + GFF4129 0.57 +0.1 34,226 + GFF4129 0.57 -0.6 34,226 + GFF4129 0.57 -0.2 34,226 + GFF4129 0.57 -0.3 34,226 + GFF4129 0.57 -0.0 34,227 - GFF4129 0.57 +0.6 34,227 - GFF4129 0.57 -0.3 34,247 + GFF4129 0.58 -1.0 34,364 + GFF4129 0.65 -0.8 34,364 + GFF4129 0.65 -0.3 34,607 + GFF4129 0.80 +0.7 34,608 - GFF4129 0.80 +0.3 34,800 - -1.0 34,987 + -0.0 34,988 - -0.4 35,039 - -1.0 35,198 - GFF4130 0.17 -0.9 35,480 - GFF4130 0.36 -0.2 35,864 - GFF4130 0.61 -0.5
Or see this region's nucleotide sequence