Strain Fitness in Variovorax sp. SCN45 around GFF4104

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4103 and GFF4104 are separated by 31 nucleotidesGFF4104 and GFF4105 overlap by 4 nucleotidesGFF4105 and GFF4106 are separated by 25 nucleotides GFF4103 - N-methylhydantoinase A (EC 3.5.2.14), at 5,440 to 7,596 GFF4103 GFF4104 - Cystathionine beta-lyase (EC 4.4.1.8), at 7,628 to 8,842 GFF4104 GFF4105 - Cysteine dioxygenase (EC 1.13.11.20), at 8,839 to 9,480 GFF4105 GFF4106 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 9,506 to 10,369 GFF4106 Position (kb) 7 8 9Strain fitness (log2 ratio) -1 0 1at 6.662 kb on + strand, within GFF4103at 6.663 kb on - strand, within GFF4103at 6.929 kb on + strand, within GFF4103at 6.929 kb on + strand, within GFF4103at 6.963 kb on - strand, within GFF4103at 7.067 kb on + strand, within GFF4103at 8.194 kb on - strand, within GFF4104at 8.194 kb on - strand, within GFF4104at 8.365 kb on - strand, within GFF4104at 8.365 kb on - strand, within GFF4104at 8.485 kb on - strand, within GFF4104

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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6,662 + GFF4103 0.57 -1.6
6,663 - GFF4103 0.57 +0.4
6,929 + GFF4103 0.69 -0.0
6,929 + GFF4103 0.69 +0.3
6,963 - GFF4103 0.71 -0.4
7,067 + GFF4103 0.75 -1.3
8,194 - GFF4104 0.47 -0.2
8,194 - GFF4104 0.47 -0.5
8,365 - GFF4104 0.61 -0.8
8,365 - GFF4104 0.61 -0.6
8,485 - GFF4104 0.71 -1.4

Or see this region's nucleotide sequence