Strain Fitness in Variovorax sp. SCN45 around GFF3742

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3741 and GFF3742 overlap by 4 nucleotidesGFF3742 and GFF3743 are separated by 32 nucleotides GFF3741 - Uncharacterized MFS-type transporter, at 236,535 to 238,085 GFF3741 GFF3742 - Type IV pilus assembly ATPase component PilU, at 238,082 to 239,218 GFF3742 GFF3743 - Twitching motility protein PilT, at 239,251 to 240,294 GFF3743 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2 3at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.160 kb on - strand, within GFF3741at 237.160 kb on - strand, within GFF3741at 237.168 kb on + strand, within GFF3741at 237.169 kb on - strand, within GFF3741at 237.381 kb on + strand, within GFF3741at 237.382 kb on - strand, within GFF3741at 237.390 kb on + strand, within GFF3741at 237.390 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.418 kb on - strand, within GFF3741at 237.418 kb on - strand, within GFF3741at 237.474 kb on + strand, within GFF3741at 237.475 kb on - strand, within GFF3741at 237.475 kb on - strand, within GFF3741at 237.522 kb on + strand, within GFF3741at 237.522 kb on + strand, within GFF3741at 237.532 kb on - strand, within GFF3741at 237.784 kb on - strand, within GFF3741at 238.084 kb on - strandat 238.476 kb on - strand, within GFF3742at 239.310 kb on + strandat 239.310 kb on + strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.311 kb on - strandat 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.840 kb on + strand, within GFF3743at 239.841 kb on - strand, within GFF3743at 239.841 kb on - strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.108 kb on - strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.141 kb on - strand, within GFF3743

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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237,159 + GFF3741 0.40 +0.1
237,159 + GFF3741 0.40 +0.5
237,159 + GFF3741 0.40 -1.0
237,159 + GFF3741 0.40 -0.3
237,159 + GFF3741 0.40 -0.3
237,160 - GFF3741 0.40 -0.1
237,160 - GFF3741 0.40 +0.7
237,168 + GFF3741 0.41 +0.2
237,169 - GFF3741 0.41 -0.3
237,381 + GFF3741 0.55 -0.8
237,382 - GFF3741 0.55 -0.2
237,390 + GFF3741 0.55 +1.5
237,390 + GFF3741 0.55 +0.9
237,393 + GFF3741 0.55 +0.0
237,393 + GFF3741 0.55 +0.5
237,393 + GFF3741 0.55 +0.5
237,393 + GFF3741 0.55 -0.2
237,393 + GFF3741 0.55 +3.2
237,394 - GFF3741 0.55 -0.1
237,394 - GFF3741 0.55 +0.3
237,394 - GFF3741 0.55 +0.4
237,394 - GFF3741 0.55 +2.7
237,394 - GFF3741 0.55 -0.2
237,394 - GFF3741 0.55 +0.3
237,394 - GFF3741 0.55 -0.2
237,394 - GFF3741 0.55 +0.3
237,396 + GFF3741 0.56 -0.6
237,396 + GFF3741 0.56 -0.6
237,396 + GFF3741 0.56 -0.4
237,396 + GFF3741 0.56 +0.8
237,396 + GFF3741 0.56 -0.1
237,396 + GFF3741 0.56 -0.9
237,397 - GFF3741 0.56 -0.3
237,397 - GFF3741 0.56 -0.5
237,397 - GFF3741 0.56 -0.6
237,397 - GFF3741 0.56 +0.3
237,417 + GFF3741 0.57 +0.9
237,417 + GFF3741 0.57 -0.3
237,417 + GFF3741 0.57 -0.9
237,417 + GFF3741 0.57 -1.9
237,418 - GFF3741 0.57 -1.1
237,418 - GFF3741 0.57 -0.2
237,474 + GFF3741 0.61 +0.4
237,475 - GFF3741 0.61 -1.1
237,475 - GFF3741 0.61 -1.0
237,522 + GFF3741 0.64 -1.9
237,522 + GFF3741 0.64 -0.1
237,532 - GFF3741 0.64 +0.5
237,784 - GFF3741 0.81 +0.0
238,084 - -0.9
238,476 - GFF3742 0.35 +1.7
239,310 + -1.5
239,310 + +0.8
239,311 - +1.1
239,311 - +0.8
239,311 - +1.0
239,311 - +0.5
239,311 - +0.6
239,387 + GFF3743 0.13 +1.0
239,387 + GFF3743 0.13 +2.7
239,387 + GFF3743 0.13 +1.3
239,387 + GFF3743 0.13 +1.1
239,387 + GFF3743 0.13 +0.8
239,387 + GFF3743 0.13 +2.0
239,387 + GFF3743 0.13 +2.4
239,387 + GFF3743 0.13 +2.2
239,387 + GFF3743 0.13 +0.9
239,387 + GFF3743 0.13 +0.8
239,387 + GFF3743 0.13 +1.4
239,388 - GFF3743 0.13 +1.2
239,388 - GFF3743 0.13 +1.9
239,388 - GFF3743 0.13 +2.1
239,388 - GFF3743 0.13 +1.4
239,388 - GFF3743 0.13 +1.2
239,388 - GFF3743 0.13 +0.9
239,388 - GFF3743 0.13 +1.3
239,388 - GFF3743 0.13 +2.0
239,388 - GFF3743 0.13 +2.1
239,388 - GFF3743 0.13 +0.9
239,388 - GFF3743 0.13 +1.1
239,607 + GFF3743 0.34 +0.1
239,607 + GFF3743 0.34 +0.3
239,607 + GFF3743 0.34 -0.1
239,607 + GFF3743 0.34 +0.1
239,607 + GFF3743 0.34 -0.1
239,607 + GFF3743 0.34 +1.3
239,607 + GFF3743 0.34 +1.7
239,608 - GFF3743 0.34 +2.0
239,608 - GFF3743 0.34 +1.2
239,608 - GFF3743 0.34 +1.4
239,671 + GFF3743 0.40 +1.4
239,671 + GFF3743 0.40 +2.9
239,671 + GFF3743 0.40 +1.0
239,671 + GFF3743 0.40 +1.6
239,672 - GFF3743 0.40 +1.1
239,672 - GFF3743 0.40 +1.3
239,672 - GFF3743 0.40 +1.1
239,672 - GFF3743 0.40 +1.1
239,672 - GFF3743 0.40 +0.8
239,672 - GFF3743 0.40 +1.1
239,840 + GFF3743 0.56 +2.1
239,841 - GFF3743 0.57 +1.0
239,841 - GFF3743 0.57 +1.4
239,858 + GFF3743 0.58 +1.5
239,858 + GFF3743 0.58 +2.1
239,858 + GFF3743 0.58 +1.0
239,858 + GFF3743 0.58 +0.7
239,858 + GFF3743 0.58 +1.4
239,858 + GFF3743 0.58 +0.7
239,858 + GFF3743 0.58 +1.7
239,858 + GFF3743 0.58 +1.7
239,858 + GFF3743 0.58 +1.6
239,859 - GFF3743 0.58 +1.3
239,859 - GFF3743 0.58 +0.9
239,859 - GFF3743 0.58 +0.2
239,859 - GFF3743 0.58 +1.6
239,859 - GFF3743 0.58 +0.9
239,859 - GFF3743 0.58 +0.4
239,859 - GFF3743 0.58 +0.5
239,859 - GFF3743 0.58 +1.2
239,859 - GFF3743 0.58 +0.8
239,859 - GFF3743 0.58 +1.3
239,859 - GFF3743 0.58 +1.8
240,107 + GFF3743 0.82 +1.1
240,107 + GFF3743 0.82 +1.2
240,107 + GFF3743 0.82 -0.3
240,107 + GFF3743 0.82 +1.4
240,107 + GFF3743 0.82 +2.2
240,107 + GFF3743 0.82 +1.3
240,108 - GFF3743 0.82 +0.9
240,140 + GFF3743 0.85 +0.8
240,140 + GFF3743 0.85 -0.8
240,140 + GFF3743 0.85 +1.0
240,140 + GFF3743 0.85 +2.5
240,140 + GFF3743 0.85 +2.5
240,141 - GFF3743 0.85 +1.1

Or see this region's nucleotide sequence