Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3701 and GFF3702 are separated by 5 nucleotides GFF3702 and GFF3703 are separated by 126 nucleotides GFF3703 and GFF3704 are separated by 45 nucleotides GFF3704 and GFF3705 are separated by 22 nucleotides
GFF3701 - FIG004694: Hypothetical protein, at 202,143 to 202,670
GFF3701
GFF3702 - Beta-propeller domains of methanol dehydrogenase type, at 202,676 to 203,533
GFF3702
GFF3703 - LemA family protein, at 203,660 to 204,259
GFF3703
GFF3704 - FIG00536957: hypothetical protein, at 204,305 to 205,063
GFF3704
GFF3705 - Amidases related to nicotinamidase, at 205,086 to 205,760
GFF3705
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1 at 203.328 kb on + strand, within GFF3702 at 203.661 kb on + strand at 203.745 kb on + strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.800 kb on - strand, within GFF3703 at 203.820 kb on + strand, within GFF3703 at 204.136 kb on - strand, within GFF3703 at 204.198 kb on + strand, within GFF3703 at 204.199 kb on - strand, within GFF3703 at 204.199 kb on - strand, within GFF3703 at 204.266 kb on + strand at 204.266 kb on + strand at 204.267 kb on - strand at 204.267 kb on - strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.599 kb on + strand, within GFF3704 at 204.600 kb on - strand, within GFF3704
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 203,328 + GFF3702 0.76 -0.0 203,661 + -0.1 203,745 + GFF3703 0.14 -0.2 203,800 - GFF3703 0.23 +0.3 203,800 - GFF3703 0.23 +0.8 203,800 - GFF3703 0.23 +0.1 203,800 - GFF3703 0.23 -0.2 203,800 - GFF3703 0.23 +0.0 203,800 - GFF3703 0.23 -0.7 203,800 - GFF3703 0.23 +0.4 203,820 + GFF3703 0.27 +0.5 204,136 - GFF3703 0.79 +0.7 204,198 + GFF3703 0.90 -0.2 204,199 - GFF3703 0.90 +0.2 204,199 - GFF3703 0.90 -0.5 204,266 + -0.1 204,266 + +0.2 204,267 - -0.6 204,267 - +0.1 204,290 + -0.6 204,290 + +0.2 204,290 + -0.8 204,290 + -0.0 204,290 + -0.3 204,295 + -0.1 204,295 + +0.7 204,295 + -0.4 204,295 + +1.5 204,295 + +0.2 204,295 + -0.5 204,295 + +1.1 204,295 + +0.1 204,295 + +0.2 204,296 - +0.5 204,296 - -0.3 204,296 - -0.7 204,296 - +0.1 204,296 - -0.3 204,296 - +0.5 204,296 - +0.1 204,296 - +0.7 204,296 - -0.7 204,296 - -0.1 204,296 - -0.7 204,296 - +1.3 204,296 - +0.2 204,296 - -0.7 204,296 - -0.2 204,599 + GFF3704 0.39 +0.3 204,600 - GFF3704 0.39 +0.9
Or see this region's nucleotide sequence