Strain Fitness in Variovorax sp. SCN45 around GFF3568

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3567 and GFF3568 are separated by 33 nucleotidesGFF3568 and GFF3569 are separated by 168 nucleotidesGFF3569 and GFF3570 are separated by 89 nucleotides GFF3567 - YihE protein, required for LPS synthesis, at 79,452 to 80,486 GFF3567 GFF3568 - Bll1370 protein, at 80,520 to 81,635 GFF3568 GFF3569 - Organic hydroperoxide resistance protein, at 81,804 to 82,229 GFF3569 GFF3570 - Organic hydroperoxide resistance transcriptional regulator, at 82,319 to 82,774 GFF3570 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1at 79.523 kb on - strandat 79.523 kb on - strandat 79.597 kb on + strand, within GFF3567at 79.597 kb on + strand, within GFF3567at 79.598 kb on - strand, within GFF3567at 80.147 kb on - strand, within GFF3567at 80.147 kb on - strand, within GFF3567at 80.299 kb on + strand, within GFF3567at 80.299 kb on + strand, within GFF3567at 80.300 kb on - strand, within GFF3567at 80.300 kb on - strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.345 kb on - strand, within GFF3567at 80.345 kb on - strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.447 kb on - strandat 80.543 kb on - strandat 80.599 kb on + strandat 80.599 kb on + strandat 80.600 kb on - strandat 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.962 kb on + strand, within GFF3568at 80.962 kb on + strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 81.217 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.245 kb on - strand, within GFF3568at 81.253 kb on + strand, within GFF3568at 81.253 kb on + strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.352 kb on + strand, within GFF3568at 81.352 kb on + strand, within GFF3568at 81.353 kb on - strand, within GFF3568at 81.353 kb on - strand, within GFF3568at 81.358 kb on + strand, within GFF3568at 81.358 kb on + strand, within GFF3568at 81.359 kb on - strand, within GFF3568at 81.457 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.470 kb on - strand, within GFF3568at 81.470 kb on - strand, within GFF3568at 81.496 kb on + strand, within GFF3568at 81.496 kb on + strand, within GFF3568at 81.496 kb on + strand, within GFF3568at 81.497 kb on - strand, within GFF3568at 81.497 kb on - strand, within GFF3568at 81.497 kb on - strand, within GFF3568at 81.853 kb on + strand, within GFF3569at 82.201 kb on + strandat 82.201 kb on + strandat 82.201 kb on + strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.515 kb on + strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.635 kb on + strand, within GFF3570

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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79,523 - +0.5
79,523 - +0.0
79,597 + GFF3567 0.14 -0.6
79,597 + GFF3567 0.14 -0.2
79,598 - GFF3567 0.14 +0.7
80,147 - GFF3567 0.67 -0.1
80,147 - GFF3567 0.67 -1.1
80,299 + GFF3567 0.82 +0.1
80,299 + GFF3567 0.82 -0.5
80,300 - GFF3567 0.82 -0.8
80,300 - GFF3567 0.82 -0.0
80,335 + GFF3567 0.85 -1.3
80,335 + GFF3567 0.85 -1.8
80,335 + GFF3567 0.85 -0.1
80,336 - GFF3567 0.85 -1.0
80,336 - GFF3567 0.85 +0.1
80,336 - GFF3567 0.85 -0.3
80,345 - GFF3567 0.86 -0.9
80,345 - GFF3567 0.86 -0.2
80,359 + GFF3567 0.88 -0.2
80,359 + GFF3567 0.88 +0.7
80,359 + GFF3567 0.88 +1.0
80,447 - +0.2
80,543 - -0.6
80,599 + -0.7
80,599 + -0.3
80,600 - -0.2
80,920 + GFF3568 0.36 +0.1
80,920 + GFF3568 0.36 -1.0
80,920 + GFF3568 0.36 -0.7
80,920 + GFF3568 0.36 -0.9
80,920 + GFF3568 0.36 +0.1
80,920 + GFF3568 0.36 -0.5
80,920 + GFF3568 0.36 +0.4
80,921 - GFF3568 0.36 -0.0
80,921 - GFF3568 0.36 +0.3
80,921 - GFF3568 0.36 +0.1
80,921 - GFF3568 0.36 -0.4
80,921 - GFF3568 0.36 -0.1
80,921 - GFF3568 0.36 +1.7
80,921 - GFF3568 0.36 -0.6
80,921 - GFF3568 0.36 -0.2
80,962 + GFF3568 0.40 -1.4
80,962 + GFF3568 0.40 -0.3
80,963 - GFF3568 0.40 -0.8
80,963 - GFF3568 0.40 -0.3
80,963 - GFF3568 0.40 -0.6
80,963 - GFF3568 0.40 -0.3
80,963 - GFF3568 0.40 -0.0
80,963 - GFF3568 0.40 -0.5
80,963 - GFF3568 0.40 +0.1
80,980 + GFF3568 0.41 +0.5
80,980 + GFF3568 0.41 -0.2
80,980 + GFF3568 0.41 -0.5
80,980 + GFF3568 0.41 +0.2
80,981 - GFF3568 0.41 -0.5
80,981 - GFF3568 0.41 -0.1
80,981 - GFF3568 0.41 -0.3
81,217 + GFF3568 0.62 +0.5
81,244 + GFF3568 0.65 +0.3
81,244 + GFF3568 0.65 -0.8
81,244 + GFF3568 0.65 -0.9
81,244 + GFF3568 0.65 -0.2
81,245 - GFF3568 0.65 +0.1
81,253 + GFF3568 0.66 -0.1
81,253 + GFF3568 0.66 -0.5
81,254 - GFF3568 0.66 -0.1
81,254 - GFF3568 0.66 -0.3
81,254 - GFF3568 0.66 +0.2
81,254 - GFF3568 0.66 -1.2
81,352 + GFF3568 0.75 -0.4
81,352 + GFF3568 0.75 -1.5
81,353 - GFF3568 0.75 -0.4
81,353 - GFF3568 0.75 -2.0
81,358 + GFF3568 0.75 -0.4
81,358 + GFF3568 0.75 -1.2
81,359 - GFF3568 0.75 +0.6
81,457 + GFF3568 0.84 -0.5
81,469 + GFF3568 0.85 +1.7
81,469 + GFF3568 0.85 -0.6
81,469 + GFF3568 0.85 -0.6
81,469 + GFF3568 0.85 +0.1
81,469 + GFF3568 0.85 +0.7
81,469 + GFF3568 0.85 +0.1
81,470 - GFF3568 0.85 +0.7
81,470 - GFF3568 0.85 +0.6
81,496 + GFF3568 0.87 -1.5
81,496 + GFF3568 0.87 +1.2
81,496 + GFF3568 0.87 +0.3
81,497 - GFF3568 0.88 -0.1
81,497 - GFF3568 0.88 -1.2
81,497 - GFF3568 0.88 -0.3
81,853 + GFF3569 0.12 -0.7
82,201 + +0.4
82,201 + -0.2
82,201 + -0.5
82,202 - -1.1
82,202 - -0.1
82,202 - -0.6
82,202 - +0.3
82,202 - -0.4
82,202 - -0.1
82,202 - +0.9
82,202 - -0.7
82,202 - -0.9
82,515 + GFF3570 0.43 -0.7
82,516 - GFF3570 0.43 +0.3
82,516 - GFF3570 0.43 -0.7
82,516 - GFF3570 0.43 -0.4
82,516 - GFF3570 0.43 +0.4
82,516 - GFF3570 0.43 -0.9
82,635 + GFF3570 0.69 -1.3
82,635 + GFF3570 0.69 -0.7
82,635 + GFF3570 0.69 -2.5

Or see this region's nucleotide sequence