Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF345 and GFF346 are separated by 154 nucleotides GFF346 and GFF347 are separated by 101 nucleotides GFF347 and GFF348 are separated by 69 nucleotides GFF348 and GFF349 are separated by 49 nucleotides
GFF345 - hypothetical protein, at 379,410 to 379,748
GFF345
GFF346 - hypothetical protein, at 379,903 to 380,097
GFF346
GFF347 - Exported protein, at 380,199 to 380,657
GFF347
GFF348 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 380,727 to 381,308
GFF348
GFF349 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 381,358 to 382,755
GFF349
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.746 kb on + strand at 379.747 kb on - strand at 379.747 kb on - strand at 379.747 kb on - strand at 379.747 kb on - strand at 379.747 kb on - strand at 379.747 kb on - strand at 379.747 kb on - strand at 379.853 kb on + strand at 379.853 kb on + strand at 379.853 kb on + strand at 379.853 kb on + strand at 379.853 kb on + strand at 379.853 kb on + strand at 379.853 kb on + strand at 379.854 kb on - strand at 379.885 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.095 kb on + strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.148 kb on + strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.149 kb on - strand at 380.212 kb on + strand at 380.313 kb on + strand, within GFF347 at 380.314 kb on - strand, within GFF347 at 380.314 kb on - strand, within GFF347 at 380.314 kb on - strand, within GFF347 at 380.325 kb on - strand, within GFF347 at 380.535 kb on + strand, within GFF347 at 380.562 kb on + strand, within GFF347 at 380.562 kb on + strand, within GFF347 at 380.562 kb on + strand, within GFF347 at 380.562 kb on + strand, within GFF347 at 380.562 kb on + strand, within GFF347 at 380.563 kb on - strand, within GFF347 at 380.563 kb on - strand, within GFF347 at 380.563 kb on - strand, within GFF347 at 380.810 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.819 kb on - strand, within GFF348 at 380.822 kb on - strand, within GFF348 at 380.822 kb on - strand, within GFF348 at 380.822 kb on - strand, within GFF348 at 380.822 kb on - strand, within GFF348 at 380.822 kb on - strand, within GFF348 at 380.822 kb on - strand, within GFF348 at 380.957 kb on + strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 380.999 kb on - strand, within GFF348 at 381.115 kb on + strand, within GFF348 at 381.115 kb on + strand, within GFF348 at 381.115 kb on + strand, within GFF348 at 381.115 kb on + strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.116 kb on - strand, within GFF348 at 381.205 kb on + strand, within GFF348 at 381.205 kb on + strand, within GFF348 at 381.205 kb on + strand, within GFF348 at 381.205 kb on + strand, within GFF348 at 381.205 kb on + strand, within GFF348 at 381.232 kb on + strand, within GFF348 at 381.232 kb on + strand, within GFF348 at 381.232 kb on + strand, within GFF348 at 381.232 kb on + strand, within GFF348 at 381.232 kb on + strand, within GFF348 at 381.232 kb on + strand, within GFF348 at 381.232 kb on + strand, within GFF348 at 381.280 kb on + strand at 381.281 kb on - strand at 381.281 kb on - strand at 381.348 kb on + strand at 381.349 kb on - strand at 381.349 kb on - strand at 381.349 kb on - strand at 381.349 kb on - strand at 381.355 kb on + strand at 381.355 kb on + strand at 381.355 kb on + strand at 381.355 kb on + strand at 381.355 kb on + strand at 381.355 kb on + strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.359 kb on + strand at 381.359 kb on + strand at 381.359 kb on + strand at 381.359 kb on + strand at 381.359 kb on + strand at 381.359 kb on + strand at 381.359 kb on + strand at 381.360 kb on - strand at 381.360 kb on - strand at 381.360 kb on - strand at 381.512 kb on + strand, within GFF349 at 381.512 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.604 kb on + strand, within GFF349 at 381.605 kb on - strand, within GFF349 at 381.605 kb on - strand, within GFF349 at 381.605 kb on - strand, within GFF349 at 381.677 kb on + strand, within GFF349 at 381.677 kb on + strand, within GFF349 at 381.678 kb on - strand, within GFF349 at 381.781 kb on + strand, within GFF349 at 381.781 kb on + strand, within GFF349 at 381.781 kb on + strand, within GFF349 at 381.781 kb on + strand, within GFF349 at 381.781 kb on + strand, within GFF349 at 381.781 kb on + strand, within GFF349 at 381.781 kb on + strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 381.782 kb on - strand, within GFF349 at 382.079 kb on + strand, within GFF349 at 382.079 kb on + strand, within GFF349 at 382.080 kb on - strand, within GFF349 at 382.080 kb on - strand, within GFF349 at 382.080 kb on - strand, within GFF349 at 382.165 kb on + strand, within GFF349 at 382.248 kb on + strand, within GFF349 at 382.248 kb on + strand, within GFF349 at 382.248 kb on + strand, within GFF349 at 382.249 kb on - strand, within GFF349 at 382.249 kb on - strand, within GFF349 at 382.249 kb on - strand, within GFF349
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 379,746 + -0.8 379,746 + -0.7 379,746 + -2.6 379,746 + -0.4 379,746 + -0.9 379,746 + +0.5 379,746 + -0.7 379,746 + +0.1 379,746 + -0.8 379,746 + +0.5 379,746 + -0.1 379,746 + +1.1 379,746 + +0.8 379,747 - +0.8 379,747 - +0.2 379,747 - +0.1 379,747 - -0.5 379,747 - -1.0 379,747 - -0.4 379,747 - +1.0 379,853 + +0.8 379,853 + +0.4 379,853 + -0.0 379,853 + -0.3 379,853 + -0.5 379,853 + -0.1 379,853 + -0.7 379,854 - +0.5 379,885 + -0.7 380,095 + -0.5 380,095 + -0.5 380,095 + +0.2 380,095 + -1.2 380,095 + +1.6 380,095 + -1.1 380,095 + +0.5 380,095 + +0.1 380,095 + +0.6 380,095 + -0.5 380,095 + +0.1 380,096 - -1.1 380,096 - -0.7 380,096 - -0.2 380,096 - +0.4 380,096 - -0.2 380,096 - -2.0 380,096 - -2.5 380,096 - -0.9 380,096 - -0.1 380,096 - +0.1 380,148 + +0.2 380,148 + -0.2 380,148 + -0.4 380,148 + -0.2 380,148 + -0.2 380,148 + -0.1 380,148 + +0.5 380,148 + -1.9 380,148 + +0.1 380,149 - -0.1 380,149 - +0.0 380,149 - +0.0 380,149 - +2.5 380,149 - -1.3 380,149 - +1.5 380,149 - -0.1 380,149 - -0.2 380,149 - -0.7 380,149 - -0.3 380,149 - -2.1 380,212 + -0.7 380,313 + GFF347 0.25 +0.2 380,314 - GFF347 0.25 -0.3 380,314 - GFF347 0.25 +0.1 380,314 - GFF347 0.25 -0.5 380,325 - GFF347 0.27 -0.1 380,535 + GFF347 0.73 -1.0 380,562 + GFF347 0.79 +0.5 380,562 + GFF347 0.79 -0.5 380,562 + GFF347 0.79 -0.1 380,562 + GFF347 0.79 +0.1 380,562 + GFF347 0.79 +0.2 380,563 - GFF347 0.79 +0.3 380,563 - GFF347 0.79 -0.7 380,563 - GFF347 0.79 -0.8 380,810 - GFF348 0.14 -0.9 380,819 - GFF348 0.16 -0.1 380,819 - GFF348 0.16 -0.3 380,819 - GFF348 0.16 +0.9 380,819 - GFF348 0.16 +0.7 380,819 - GFF348 0.16 -0.0 380,819 - GFF348 0.16 +0.0 380,819 - GFF348 0.16 +0.2 380,819 - GFF348 0.16 +0.8 380,819 - GFF348 0.16 +0.8 380,819 - GFF348 0.16 -0.7 380,819 - GFF348 0.16 -1.2 380,819 - GFF348 0.16 +1.0 380,819 - GFF348 0.16 -1.5 380,819 - GFF348 0.16 -0.4 380,819 - GFF348 0.16 +0.5 380,819 - GFF348 0.16 +0.4 380,819 - GFF348 0.16 -0.5 380,819 - GFF348 0.16 +0.2 380,822 - GFF348 0.16 -0.1 380,822 - GFF348 0.16 -0.7 380,822 - GFF348 0.16 +0.9 380,822 - GFF348 0.16 -1.0 380,822 - GFF348 0.16 -1.7 380,822 - GFF348 0.16 -0.8 380,957 + GFF348 0.40 +0.5 380,999 - GFF348 0.47 +0.5 380,999 - GFF348 0.47 -0.4 380,999 - GFF348 0.47 -0.1 380,999 - GFF348 0.47 +1.3 380,999 - GFF348 0.47 -1.9 380,999 - GFF348 0.47 -1.0 380,999 - GFF348 0.47 -0.6 380,999 - GFF348 0.47 +2.0 380,999 - GFF348 0.47 -1.1 380,999 - GFF348 0.47 -0.5 381,115 + GFF348 0.67 -2.0 381,115 + GFF348 0.67 +0.1 381,115 + GFF348 0.67 -0.5 381,115 + GFF348 0.67 +0.1 381,116 - GFF348 0.67 +1.2 381,116 - GFF348 0.67 -0.2 381,116 - GFF348 0.67 -0.1 381,116 - GFF348 0.67 -1.5 381,116 - GFF348 0.67 -0.4 381,116 - GFF348 0.67 -0.1 381,116 - GFF348 0.67 -0.8 381,116 - GFF348 0.67 +0.0 381,116 - GFF348 0.67 +0.6 381,116 - GFF348 0.67 +0.1 381,116 - GFF348 0.67 -0.5 381,116 - GFF348 0.67 +0.8 381,116 - GFF348 0.67 +1.5 381,116 - GFF348 0.67 +1.5 381,205 + GFF348 0.82 -0.3 381,205 + GFF348 0.82 -0.9 381,205 + GFF348 0.82 +1.2 381,205 + GFF348 0.82 +0.9 381,205 + GFF348 0.82 -0.0 381,232 + GFF348 0.87 +0.8 381,232 + GFF348 0.87 -1.1 381,232 + GFF348 0.87 +1.5 381,232 + GFF348 0.87 -0.1 381,232 + GFF348 0.87 -1.1 381,232 + GFF348 0.87 -0.1 381,232 + GFF348 0.87 -0.2 381,280 + -0.4 381,281 - -0.7 381,281 - +0.0 381,348 + +0.0 381,349 - +0.1 381,349 - -1.5 381,349 - +0.3 381,349 - +1.3 381,355 + -1.0 381,355 + -0.2 381,355 + -0.1 381,355 + +0.1 381,355 + -0.7 381,355 + -0.1 381,356 - -0.2 381,356 - +0.3 381,356 - +1.8 381,356 - +1.8 381,356 - +0.2 381,356 - -0.2 381,356 - -1.0 381,359 + +1.0 381,359 + +0.5 381,359 + +0.5 381,359 + -1.7 381,359 + -0.7 381,359 + -0.2 381,359 + -1.1 381,360 - -0.5 381,360 - -0.2 381,360 - -0.6 381,512 + GFF349 0.11 +1.0 381,512 + GFF349 0.11 -2.2 381,604 + GFF349 0.18 +0.6 381,604 + GFF349 0.18 +0.5 381,604 + GFF349 0.18 -0.5 381,604 + GFF349 0.18 +2.5 381,604 + GFF349 0.18 +1.1 381,604 + GFF349 0.18 -1.5 381,604 + GFF349 0.18 -1.4 381,604 + GFF349 0.18 -1.1 381,605 - GFF349 0.18 -1.0 381,605 - GFF349 0.18 +0.1 381,605 - GFF349 0.18 +1.3 381,677 + GFF349 0.23 +0.1 381,677 + GFF349 0.23 +0.3 381,678 - GFF349 0.23 -0.7 381,781 + GFF349 0.30 +0.6 381,781 + GFF349 0.30 -0.3 381,781 + GFF349 0.30 -0.3 381,781 + GFF349 0.30 -0.5 381,781 + GFF349 0.30 -0.1 381,781 + GFF349 0.30 +0.0 381,781 + GFF349 0.30 +1.5 381,782 - GFF349 0.30 -1.1 381,782 - GFF349 0.30 -0.3 381,782 - GFF349 0.30 -0.8 381,782 - GFF349 0.30 -0.5 381,782 - GFF349 0.30 -0.9 381,782 - GFF349 0.30 +0.1 381,782 - GFF349 0.30 -0.7 381,782 - GFF349 0.30 -0.6 381,782 - GFF349 0.30 -1.9 381,782 - GFF349 0.30 +0.7 381,782 - GFF349 0.30 +0.2 381,782 - GFF349 0.30 +0.3 382,079 + GFF349 0.52 +2.3 382,079 + GFF349 0.52 -0.0 382,080 - GFF349 0.52 -0.1 382,080 - GFF349 0.52 +0.5 382,080 - GFF349 0.52 -0.2 382,165 + GFF349 0.58 -0.0 382,248 + GFF349 0.64 -0.2 382,248 + GFF349 0.64 -0.4 382,248 + GFF349 0.64 -0.4 382,249 - GFF349 0.64 +0.8 382,249 - GFF349 0.64 -0.7 382,249 - GFF349 0.64 -0.4
Or see this region's nucleotide sequence