Strain Fitness in Variovorax sp. SCN45 around GFF3442

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3440 and GFF3441 are separated by 5 nucleotidesGFF3441 and GFF3442 are separated by 86 nucleotidesGFF3442 and GFF3443 are separated by 6 nucleotides GFF3440 - FIG00460300: hypothetical protein, at 263,673 to 264,503 GFF3440 GFF3441 - Hypothetical protein VC0266 (sugar utilization related?), at 264,509 to 265,087 GFF3441 GFF3442 - RidA/YER057c/UK114 superfamily protein, at 265,174 to 265,578 GFF3442 GFF3443 - hypothetical protein, at 265,585 to 267,348 GFF3443 Position (kb) 265 266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 264.192 kb on + strand, within GFF3440at 264.192 kb on + strand, within GFF3440at 264.193 kb on - strand, within GFF3440at 264.219 kb on + strand, within GFF3440at 264.219 kb on + strand, within GFF3440at 264.220 kb on - strand, within GFF3440at 264.722 kb on + strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.758 kb on + strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.882 kb on - strand, within GFF3441at 264.954 kb on - strand, within GFF3441at 265.097 kb on + strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.637 kb on + strandat 265.637 kb on + strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.806 kb on - strand, within GFF3443at 265.913 kb on + strand, within GFF3443at 265.913 kb on + strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.261 kb on + strand, within GFF3443at 266.261 kb on + strand, within GFF3443at 266.261 kb on + strand, within GFF3443at 266.262 kb on - strand, within GFF3443at 266.303 kb on + strand, within GFF3443at 266.303 kb on + strand, within GFF3443at 266.303 kb on + strand, within GFF3443at 266.304 kb on - strand, within GFF3443at 266.304 kb on - strand, within GFF3443at 266.304 kb on - strand, within GFF3443at 266.436 kb on - strand, within GFF3443at 266.436 kb on - strand, within GFF3443

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
264,192 + GFF3440 0.62 +0.5
264,192 + GFF3440 0.62 +1.1
264,193 - GFF3440 0.63 -0.6
264,219 + GFF3440 0.66 -0.2
264,219 + GFF3440 0.66 -0.9
264,220 - GFF3440 0.66 -0.6
264,722 + GFF3441 0.37 -0.4
264,723 - GFF3441 0.37 +2.9
264,723 - GFF3441 0.37 +1.1
264,723 - GFF3441 0.37 -1.8
264,723 - GFF3441 0.37 +0.5
264,723 - GFF3441 0.37 -0.2
264,758 + GFF3441 0.43 +0.1
264,759 - GFF3441 0.43 -0.3
264,759 - GFF3441 0.43 +0.3
264,873 + GFF3441 0.63 +0.9
264,873 + GFF3441 0.63 -0.5
264,874 - GFF3441 0.63 -2.2
264,874 - GFF3441 0.63 -0.1
264,882 - GFF3441 0.64 -0.8
264,954 - GFF3441 0.77 +1.0
265,097 + +2.3
265,098 - -0.7
265,098 - +0.4
265,098 - -0.9
265,270 + GFF3442 0.24 +0.0
265,270 + GFF3442 0.24 +0.1
265,270 + GFF3442 0.24 +0.1
265,270 + GFF3442 0.24 -0.4
265,270 + GFF3442 0.24 +0.2
265,270 + GFF3442 0.24 -0.6
265,270 + GFF3442 0.24 +1.6
265,270 + GFF3442 0.24 -0.5
265,270 + GFF3442 0.24 -0.8
265,270 + GFF3442 0.24 +0.3
265,271 - GFF3442 0.24 -0.6
265,271 - GFF3442 0.24 -0.7
265,271 - GFF3442 0.24 -1.1
265,271 - GFF3442 0.24 +0.1
265,271 - GFF3442 0.24 -0.3
265,271 - GFF3442 0.24 -0.0
265,271 - GFF3442 0.24 -2.2
265,271 - GFF3442 0.24 -0.1
265,271 - GFF3442 0.24 -0.2
265,423 + GFF3442 0.61 +0.3
265,423 + GFF3442 0.61 +0.2
265,424 - GFF3442 0.62 -0.3
265,424 - GFF3442 0.62 -0.2
265,424 - GFF3442 0.62 -0.2
265,424 - GFF3442 0.62 -1.4
265,424 - GFF3442 0.62 +0.3
265,465 + GFF3442 0.72 -1.1
265,465 + GFF3442 0.72 +1.0
265,465 + GFF3442 0.72 +0.7
265,465 + GFF3442 0.72 +0.3
265,465 + GFF3442 0.72 -0.5
265,465 + GFF3442 0.72 -0.3
265,465 + GFF3442 0.72 -0.8
265,465 + GFF3442 0.72 +0.7
265,465 + GFF3442 0.72 -1.0
265,465 + GFF3442 0.72 +1.3
265,466 - GFF3442 0.72 +0.7
265,466 - GFF3442 0.72 +0.7
265,466 - GFF3442 0.72 +0.1
265,466 - GFF3442 0.72 -0.0
265,466 - GFF3442 0.72 +0.5
265,637 + -0.5
265,637 + -0.6
265,638 - -0.9
265,638 - +0.5
265,638 - -0.2
265,638 - -1.3
265,638 - -1.9
265,806 - GFF3443 0.13 +0.0
265,913 + GFF3443 0.19 -0.1
265,913 + GFF3443 0.19 -0.7
265,914 - GFF3443 0.19 +1.1
265,914 - GFF3443 0.19 +0.9
265,914 - GFF3443 0.19 -0.1
265,914 - GFF3443 0.19 -1.3
265,914 - GFF3443 0.19 +0.3
265,914 - GFF3443 0.19 -0.4
265,914 - GFF3443 0.19 -0.4
266,039 + GFF3443 0.26 -0.1
266,039 + GFF3443 0.26 -0.5
266,039 + GFF3443 0.26 -0.8
266,040 - GFF3443 0.26 -0.2
266,040 - GFF3443 0.26 -0.9
266,040 - GFF3443 0.26 -0.7
266,261 + GFF3443 0.38 -0.0
266,261 + GFF3443 0.38 -0.4
266,261 + GFF3443 0.38 -0.1
266,262 - GFF3443 0.38 -0.9
266,303 + GFF3443 0.41 -0.9
266,303 + GFF3443 0.41 -1.6
266,303 + GFF3443 0.41 -1.0
266,304 - GFF3443 0.41 -0.5
266,304 - GFF3443 0.41 +0.9
266,304 - GFF3443 0.41 -0.5
266,436 - GFF3443 0.48 +0.7
266,436 - GFF3443 0.48 -0.5

Or see this region's nucleotide sequence