Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3434 and GFF3435 are separated by 1 nucleotides GFF3435 and GFF3436 are separated by 67 nucleotides GFF3436 and GFF3437 are separated by 127 nucleotides
GFF3434 - Organic hydroperoxide resistance protein, at 257,523 to 257,936
GFF3434
GFF3435 - predicted integral membrane protein, at 257,938 to 258,396
GFF3435
GFF3436 - Transcriptional regulator, LysR family, at 258,464 to 259,432
GFF3436
GFF3437 - putative membrane protein, at 259,560 to 260,903
GFF3437
Position (kb) 258
259
260 Strain fitness (log2 ratio) -1
0
1
2 at 257.544 kb on + strand at 257.544 kb on + strand at 257.545 kb on - strand at 257.793 kb on + strand, within GFF3434 at 257.793 kb on + strand, within GFF3434 at 257.793 kb on + strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.886 kb on + strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.099 kb on - strand, within GFF3435 at 258.099 kb on - strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.529 kb on - strand at 258.708 kb on + strand, within GFF3436 at 258.708 kb on + strand, within GFF3436 at 259.119 kb on + strand, within GFF3436 at 259.119 kb on + strand, within GFF3436 at 259.120 kb on - strand, within GFF3436 at 259.221 kb on + strand, within GFF3436 at 259.221 kb on + strand, within GFF3436 at 259.222 kb on - strand, within GFF3436 at 259.399 kb on - strand at 259.399 kb on - strand at 259.483 kb on - strand at 259.509 kb on + strand at 259.509 kb on + strand at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.097 kb on + strand, within GFF3437 at 260.097 kb on + strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.328 kb on + strand, within GFF3437 at 260.329 kb on - strand, within GFF3437 at 260.329 kb on - strand, within GFF3437 at 260.370 kb on + strand, within GFF3437
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 257,544 + -0.3 257,544 + -0.7 257,545 - +0.3 257,793 + GFF3434 0.65 -0.8 257,793 + GFF3434 0.65 -0.4 257,793 + GFF3434 0.65 -0.2 257,794 - GFF3434 0.65 -0.1 257,794 - GFF3434 0.65 +0.9 257,794 - GFF3434 0.65 +1.0 257,886 + GFF3434 0.88 -0.8 257,887 - GFF3434 0.88 -0.1 257,887 - GFF3434 0.88 -0.2 257,887 - GFF3434 0.88 +0.7 258,098 + GFF3435 0.35 -0.9 258,098 + GFF3435 0.35 -0.2 258,098 + GFF3435 0.35 -0.2 258,098 + GFF3435 0.35 -0.3 258,098 + GFF3435 0.35 -0.3 258,099 - GFF3435 0.35 +0.5 258,099 - GFF3435 0.35 -0.4 258,104 + GFF3435 0.36 -0.2 258,104 + GFF3435 0.36 -0.2 258,104 + GFF3435 0.36 -0.3 258,104 + GFF3435 0.36 -0.6 258,104 + GFF3435 0.36 -0.2 258,104 + GFF3435 0.36 +0.5 258,104 + GFF3435 0.36 +1.3 258,390 - -0.3 258,390 - +0.1 258,390 - +0.1 258,390 - -0.4 258,390 - +0.2 258,390 - -0.5 258,529 - +0.8 258,708 + GFF3436 0.25 -0.1 258,708 + GFF3436 0.25 -1.3 259,119 + GFF3436 0.68 -0.4 259,119 + GFF3436 0.68 -0.9 259,120 - GFF3436 0.68 +2.3 259,221 + GFF3436 0.78 -0.1 259,221 + GFF3436 0.78 -0.1 259,222 - GFF3436 0.78 +0.1 259,399 - -0.5 259,399 - +0.2 259,483 - +0.4 259,509 + -0.3 259,509 + -0.1 260,055 + GFF3437 0.37 -1.3 260,055 + GFF3437 0.37 -0.5 260,055 + GFF3437 0.37 -0.1 260,055 + GFF3437 0.37 +0.4 260,056 - GFF3437 0.37 +0.1 260,056 - GFF3437 0.37 -0.4 260,056 - GFF3437 0.37 -0.6 260,097 + GFF3437 0.40 -0.9 260,097 + GFF3437 0.40 -0.9 260,098 - GFF3437 0.40 -0.2 260,098 - GFF3437 0.40 +0.2 260,098 - GFF3437 0.40 -1.1 260,098 - GFF3437 0.40 -0.7 260,098 - GFF3437 0.40 -0.6 260,328 + GFF3437 0.57 -0.1 260,329 - GFF3437 0.57 +0.0 260,329 - GFF3437 0.57 -0.8 260,370 + GFF3437 0.60 -0.3
Or see this region's nucleotide sequence