Strain Fitness in Variovorax sp. SCN45 around GFF3303

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3301 and GFF3302 are separated by 129 nucleotidesGFF3302 and GFF3303 overlap by 4 nucleotidesGFF3303 and GFF3304 overlap by 4 nucleotides GFF3301 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 124,819 to 126,246 GFF3301 GFF3302 - no description, at 126,376 to 127,017 GFF3302 GFF3303 - Acetyltransferase, GNAT family, at 127,014 to 127,778 GFF3303 GFF3304 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 127,775 to 129,043 GFF3304 Position (kb) 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 126.023 kb on + strand, within GFF3301at 126.207 kb on + strandat 126.207 kb on + strandat 126.207 kb on + strandat 126.286 kb on - strandat 126.355 kb on - strandat 126.406 kb on + strandat 126.407 kb on - strandat 126.407 kb on - strandat 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.729 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 127.015 kb on + strandat 127.016 kb on - strandat 127.037 kb on - strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.263 kb on - strand, within GFF3303at 127.316 kb on + strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.744 kb on - strandat 128.007 kb on + strand, within GFF3304at 128.008 kb on - strand, within GFF3304at 128.067 kb on + strand, within GFF3304at 128.067 kb on + strand, within GFF3304at 128.067 kb on + strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.119 kb on - strand, within GFF3304at 128.119 kb on - strand, within GFF3304at 128.119 kb on - strand, within GFF3304at 128.269 kb on - strand, within GFF3304at 128.532 kb on + strand, within GFF3304

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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126,023 + GFF3301 0.84 +1.5
126,207 + -0.6
126,207 + +0.2
126,207 + -0.4
126,286 - +0.5
126,355 - +0.1
126,406 + -0.6
126,407 - -0.1
126,407 - -1.2
126,670 + GFF3302 0.46 -1.4
126,670 + GFF3302 0.46 -0.2
126,670 + GFF3302 0.46 +1.4
126,670 + GFF3302 0.46 -0.7
126,670 + GFF3302 0.46 +0.1
126,670 + GFF3302 0.46 -0.6
126,670 + GFF3302 0.46 +1.1
126,670 + GFF3302 0.46 -0.1
126,670 + GFF3302 0.46 +0.9
126,670 + GFF3302 0.46 -0.8
126,670 + GFF3302 0.46 -0.5
126,671 - GFF3302 0.46 -0.0
126,671 - GFF3302 0.46 -0.3
126,671 - GFF3302 0.46 -0.3
126,671 - GFF3302 0.46 -0.0
126,671 - GFF3302 0.46 +0.1
126,671 - GFF3302 0.46 -1.3
126,729 + GFF3302 0.55 -0.1
126,880 + GFF3302 0.79 -0.3
126,880 + GFF3302 0.79 +0.5
126,880 + GFF3302 0.79 -0.6
126,880 + GFF3302 0.79 +1.6
126,880 + GFF3302 0.79 -1.6
126,880 + GFF3302 0.79 -0.3
126,880 + GFF3302 0.79 -0.1
126,881 - GFF3302 0.79 +0.1
126,881 - GFF3302 0.79 +0.2
126,881 - GFF3302 0.79 -0.7
126,881 - GFF3302 0.79 -0.7
126,881 - GFF3302 0.79 -0.3
126,881 - GFF3302 0.79 -0.3
126,881 - GFF3302 0.79 -1.5
126,881 - GFF3302 0.79 -0.5
126,881 - GFF3302 0.79 +1.0
126,881 - GFF3302 0.79 +0.7
126,881 - GFF3302 0.79 +0.5
126,881 - GFF3302 0.79 -0.5
126,881 - GFF3302 0.79 +0.6
127,015 + +0.1
127,016 - +0.5
127,037 - -1.9
127,069 + +0.4
127,069 + -0.6
127,069 + -0.2
127,069 + -1.9
127,069 + -0.3
127,069 + +0.3
127,070 - -1.6
127,070 - -0.1
127,070 - -0.5
127,070 - -1.5
127,070 - -0.2
127,070 - -0.6
127,263 - GFF3303 0.33 +0.1
127,316 + GFF3303 0.39 -0.5
127,317 - GFF3303 0.40 -1.0
127,317 - GFF3303 0.40 -0.6
127,317 - GFF3303 0.40 -0.4
127,317 - GFF3303 0.40 -0.9
127,487 - GFF3303 0.62 -0.4
127,487 - GFF3303 0.62 -0.7
127,487 - GFF3303 0.62 -0.7
127,744 - -0.9
128,007 + GFF3304 0.18 -1.9
128,008 - GFF3304 0.18 -0.8
128,067 + GFF3304 0.23 -0.8
128,067 + GFF3304 0.23 -0.4
128,067 + GFF3304 0.23 -0.0
128,068 - GFF3304 0.23 -1.5
128,068 - GFF3304 0.23 -0.1
128,068 - GFF3304 0.23 -0.6
128,068 - GFF3304 0.23 -1.5
128,119 - GFF3304 0.27 +0.1
128,119 - GFF3304 0.27 -0.1
128,119 - GFF3304 0.27 +0.2
128,269 - GFF3304 0.39 -0.1
128,532 + GFF3304 0.60 +2.4

Or see this region's nucleotide sequence