Strain Fitness in Variovorax sp. SCN45 around GFF324

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF323 and GFF324 are separated by 38 nucleotidesGFF324 and GFF325 are separated by 154 nucleotides GFF323 - Possible pyrimidine-degrading protein DUF1688, at 355,148 to 356,554 GFF323 GFF324 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 356,593 to 357,222 GFF324 GFF325 - Nucleoside ABC transporter, substrate-binding protein, at 357,377 to 358,381 GFF325 Position (kb) 356 357 358Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 355.613 kb on + strand, within GFF323at 355.613 kb on + strand, within GFF323at 355.613 kb on + strand, within GFF323at 355.614 kb on - strand, within GFF323at 355.674 kb on - strand, within GFF323at 355.674 kb on - strand, within GFF323at 355.674 kb on - strand, within GFF323at 355.674 kb on - strand, within GFF323at 355.674 kb on - strand, within GFF323at 355.722 kb on - strand, within GFF323at 355.722 kb on - strand, within GFF323at 356.183 kb on + strand, within GFF323at 356.184 kb on - strand, within GFF323at 356.259 kb on - strand, within GFF323at 356.506 kb on + strandat 356.506 kb on + strandat 356.552 kb on + strandat 356.553 kb on - strandat 356.579 kb on + strandat 356.579 kb on + strandat 356.580 kb on - strandat 356.580 kb on - strandat 356.716 kb on + strand, within GFF324at 356.716 kb on + strand, within GFF324at 356.716 kb on + strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.899 kb on + strand, within GFF324at 356.900 kb on - strand, within GFF324at 356.932 kb on + strand, within GFF324at 356.932 kb on + strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.131 kb on - strand, within GFF324at 357.131 kb on - strand, within GFF324at 357.131 kb on - strand, within GFF324at 357.169 kb on + strandat 357.169 kb on + strandat 357.170 kb on - strandat 357.170 kb on - strandat 357.170 kb on - strandat 357.170 kb on - strandat 357.221 kb on - strandat 357.221 kb on - strandat 357.359 kb on - strandat 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.606 kb on - strand, within GFF325at 357.606 kb on - strand, within GFF325at 357.626 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.795 kb on - strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.205 kb on + strand, within GFF325at 358.205 kb on + strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.214 kb on + strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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355,613 + GFF323 0.33 +0.9
355,613 + GFF323 0.33 +1.0
355,613 + GFF323 0.33 -0.4
355,614 - GFF323 0.33 -0.5
355,674 - GFF323 0.37 -0.2
355,674 - GFF323 0.37 +1.8
355,674 - GFF323 0.37 -0.5
355,674 - GFF323 0.37 -0.2
355,674 - GFF323 0.37 +0.3
355,722 - GFF323 0.41 -0.9
355,722 - GFF323 0.41 +1.2
356,183 + GFF323 0.74 -0.1
356,184 - GFF323 0.74 -1.3
356,259 - GFF323 0.79 +1.8
356,506 + -0.2
356,506 + -0.6
356,552 + +0.8
356,553 - -0.5
356,579 + +0.9
356,579 + -0.9
356,580 - +1.4
356,580 - +0.4
356,716 + GFF324 0.20 +0.1
356,716 + GFF324 0.20 +1.9
356,716 + GFF324 0.20 -0.4
356,717 - GFF324 0.20 -1.1
356,717 - GFF324 0.20 -0.2
356,717 - GFF324 0.20 -0.2
356,717 - GFF324 0.20 +0.1
356,899 + GFF324 0.49 -1.0
356,900 - GFF324 0.49 +0.1
356,932 + GFF324 0.54 +0.3
356,932 + GFF324 0.54 -0.9
356,933 - GFF324 0.54 -1.0
356,933 - GFF324 0.54 -0.7
356,933 - GFF324 0.54 -0.6
356,933 - GFF324 0.54 -1.0
356,933 - GFF324 0.54 -0.6
356,935 + GFF324 0.54 +1.1
356,935 + GFF324 0.54 +0.1
356,935 + GFF324 0.54 -0.0
356,935 + GFF324 0.54 +0.4
356,935 + GFF324 0.54 -0.0
356,935 + GFF324 0.54 +0.3
356,935 + GFF324 0.54 -0.2
356,935 + GFF324 0.54 +0.1
356,935 + GFF324 0.54 -0.1
356,935 + GFF324 0.54 -0.6
356,936 - GFF324 0.54 -0.1
356,936 - GFF324 0.54 -0.6
356,936 - GFF324 0.54 +0.6
356,936 - GFF324 0.54 -0.2
356,936 - GFF324 0.54 -0.2
356,936 - GFF324 0.54 +0.7
356,936 - GFF324 0.54 -1.0
357,130 + GFF324 0.85 +0.2
357,130 + GFF324 0.85 +0.0
357,130 + GFF324 0.85 +0.2
357,130 + GFF324 0.85 -0.3
357,130 + GFF324 0.85 +0.4
357,131 - GFF324 0.85 +0.3
357,131 - GFF324 0.85 +0.1
357,131 - GFF324 0.85 -0.1
357,169 + +1.4
357,169 + -0.9
357,170 - -0.1
357,170 - -1.1
357,170 - -0.1
357,170 - -0.6
357,221 - -0.4
357,221 - +0.5
357,359 - -0.7
357,491 + GFF325 0.11 -1.0
357,491 + GFF325 0.11 +0.4
357,491 + GFF325 0.11 -0.6
357,491 + GFF325 0.11 -0.3
357,491 + GFF325 0.11 -0.4
357,491 + GFF325 0.11 -0.2
357,491 + GFF325 0.11 +0.1
357,491 + GFF325 0.11 +0.1
357,491 + GFF325 0.11 +0.3
357,492 - GFF325 0.11 -0.5
357,492 - GFF325 0.11 -0.4
357,492 - GFF325 0.11 +0.7
357,492 - GFF325 0.11 +1.4
357,492 - GFF325 0.11 +0.5
357,492 - GFF325 0.11 +0.3
357,492 - GFF325 0.11 -0.0
357,492 - GFF325 0.11 -0.9
357,492 - GFF325 0.11 +0.2
357,572 + GFF325 0.19 +0.8
357,572 + GFF325 0.19 -1.4
357,572 + GFF325 0.19 -0.4
357,572 + GFF325 0.19 -0.3
357,572 + GFF325 0.19 +0.3
357,572 + GFF325 0.19 -0.3
357,572 + GFF325 0.19 -0.6
357,573 - GFF325 0.20 -1.4
357,573 - GFF325 0.20 -0.6
357,573 - GFF325 0.20 +0.5
357,573 - GFF325 0.20 +0.9
357,606 - GFF325 0.23 +0.5
357,606 - GFF325 0.23 +0.1
357,626 + GFF325 0.25 -1.7
357,776 + GFF325 0.40 -0.6
357,776 + GFF325 0.40 +0.5
357,776 + GFF325 0.40 +0.6
357,776 + GFF325 0.40 +0.2
357,776 + GFF325 0.40 +0.8
357,776 + GFF325 0.40 +1.3
357,776 + GFF325 0.40 +0.3
357,776 + GFF325 0.40 -1.6
357,776 + GFF325 0.40 -0.1
357,776 + GFF325 0.40 -0.4
357,776 + GFF325 0.40 +0.1
357,776 + GFF325 0.40 +0.9
357,776 + GFF325 0.40 +0.6
357,776 + GFF325 0.40 -1.0
357,776 + GFF325 0.40 +0.3
357,777 - GFF325 0.40 +0.0
357,777 - GFF325 0.40 -0.8
357,777 - GFF325 0.40 -0.4
357,777 - GFF325 0.40 -1.6
357,777 - GFF325 0.40 -0.6
357,777 - GFF325 0.40 -0.1
357,777 - GFF325 0.40 +0.7
357,777 - GFF325 0.40 -1.0
357,777 - GFF325 0.40 +0.7
357,777 - GFF325 0.40 -0.6
357,777 - GFF325 0.40 +0.6
357,777 - GFF325 0.40 -0.1
357,794 + GFF325 0.41 -0.6
357,794 + GFF325 0.41 -0.1
357,794 + GFF325 0.41 +0.6
357,794 + GFF325 0.41 +0.0
357,795 - GFF325 0.42 -1.2
358,022 + GFF325 0.64 +0.1
358,022 + GFF325 0.64 -0.9
358,022 + GFF325 0.64 -0.1
358,022 + GFF325 0.64 -2.0
358,022 + GFF325 0.64 -0.7
358,022 + GFF325 0.64 -0.4
358,022 + GFF325 0.64 -0.5
358,023 - GFF325 0.64 -0.6
358,023 - GFF325 0.64 +0.0
358,023 - GFF325 0.64 +1.1
358,023 - GFF325 0.64 -0.5
358,023 - GFF325 0.64 +1.2
358,023 - GFF325 0.64 -0.2
358,023 - GFF325 0.64 -2.9
358,023 - GFF325 0.64 +0.0
358,205 + GFF325 0.82 -0.4
358,205 + GFF325 0.82 -0.4
358,206 - GFF325 0.82 +0.3
358,206 - GFF325 0.82 +0.3
358,206 - GFF325 0.82 -0.3
358,214 + GFF325 0.83 +0.3
358,215 - GFF325 0.83 -1.4
358,215 - GFF325 0.83 -0.7
358,215 - GFF325 0.83 -0.3
358,215 - GFF325 0.83 +0.0

Or see this region's nucleotide sequence