Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3143 and GFF3144 are separated by 49 nucleotides GFF3144 and GFF3145 are separated by 2 nucleotides GFF3145 and GFF3146 are separated by 43 nucleotides
GFF3143 - hypothetical protein, at 576,947 to 577,816
GFF3143
GFF3144 - hypothetical protein, at 577,866 to 579,218
GFF3144
GFF3145 - Two-component system response regulator QseB, at 579,221 to 579,847
GFF3145
GFF3146 - no description, at 579,891 to 580,481
GFF3146
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2 at 576.913 kb on + strand at 576.914 kb on - strand at 577.021 kb on - strand at 577.038 kb on + strand, within GFF3143 at 577.101 kb on + strand, within GFF3143 at 577.102 kb on - strand, within GFF3143 at 577.102 kb on - strand, within GFF3143 at 577.147 kb on - strand, within GFF3143 at 577.218 kb on + strand, within GFF3143 at 577.219 kb on - strand, within GFF3143 at 577.263 kb on + strand, within GFF3143 at 577.263 kb on + strand, within GFF3143 at 577.264 kb on - strand, within GFF3143 at 577.324 kb on - strand, within GFF3143 at 577.324 kb on - strand, within GFF3143 at 577.443 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.691 kb on + strand, within GFF3143 at 577.691 kb on + strand, within GFF3143 at 577.844 kb on + strand at 577.844 kb on + strand at 577.845 kb on - strand at 577.845 kb on - strand at 577.845 kb on - strand at 578.158 kb on + strand, within GFF3144 at 578.159 kb on - strand, within GFF3144 at 578.159 kb on - strand, within GFF3144 at 578.929 kb on + strand, within GFF3144 at 578.930 kb on - strand, within GFF3144 at 579.136 kb on + strand at 579.136 kb on + strand at 579.137 kb on - strand at 579.137 kb on - strand at 579.137 kb on - strand at 579.292 kb on - strand, within GFF3145 at 579.343 kb on - strand, within GFF3145 at 579.349 kb on - strand, within GFF3145 at 579.585 kb on + strand, within GFF3145 at 579.585 kb on + strand, within GFF3145 at 579.585 kb on + strand, within GFF3145 at 579.866 kb on + strand at 579.866 kb on + strand at 579.938 kb on - strand at 580.210 kb on + strand, within GFF3146 at 580.210 kb on + strand, within GFF3146 at 580.210 kb on + strand, within GFF3146 at 580.211 kb on - strand, within GFF3146
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 576,913 + +0.6 576,914 - -1.3 577,021 - -0.7 577,038 + GFF3143 0.10 -0.7 577,101 + GFF3143 0.18 +0.8 577,102 - GFF3143 0.18 +0.1 577,102 - GFF3143 0.18 -0.5 577,147 - GFF3143 0.23 -0.5 577,218 + GFF3143 0.31 +0.1 577,219 - GFF3143 0.31 -0.8 577,263 + GFF3143 0.36 +0.0 577,263 + GFF3143 0.36 +0.2 577,264 - GFF3143 0.36 +0.6 577,324 - GFF3143 0.43 -0.4 577,324 - GFF3143 0.43 -0.1 577,443 + GFF3143 0.57 -0.2 577,519 + GFF3143 0.66 +0.8 577,519 + GFF3143 0.66 +0.9 577,519 + GFF3143 0.66 -0.1 577,602 + GFF3143 0.75 +0.0 577,602 + GFF3143 0.75 -0.4 577,602 + GFF3143 0.75 -0.4 577,602 + GFF3143 0.75 -0.2 577,603 - GFF3143 0.75 -1.0 577,603 - GFF3143 0.75 -0.7 577,603 - GFF3143 0.75 +0.4 577,603 - GFF3143 0.75 -0.3 577,603 - GFF3143 0.75 -0.5 577,603 - GFF3143 0.75 -1.1 577,603 - GFF3143 0.75 +0.9 577,691 + GFF3143 0.86 -1.8 577,691 + GFF3143 0.86 +0.4 577,844 + +0.4 577,844 + -0.4 577,845 - -0.2 577,845 - -0.6 577,845 - +0.6 578,158 + GFF3144 0.22 +0.6 578,159 - GFF3144 0.22 -0.6 578,159 - GFF3144 0.22 +0.5 578,929 + GFF3144 0.79 +0.3 578,930 - GFF3144 0.79 -0.3 579,136 + -0.0 579,136 + +0.9 579,137 - +1.3 579,137 - +0.2 579,137 - +0.4 579,292 - GFF3145 0.11 -0.7 579,343 - GFF3145 0.19 -0.0 579,349 - GFF3145 0.20 -0.6 579,585 + GFF3145 0.58 +0.2 579,585 + GFF3145 0.58 +2.0 579,585 + GFF3145 0.58 -0.3 579,866 + +0.8 579,866 + +1.0 579,938 - -0.2 580,210 + GFF3146 0.54 -0.2 580,210 + GFF3146 0.54 -0.3 580,210 + GFF3146 0.54 -0.9 580,211 - GFF3146 0.54 +0.0
Or see this region's nucleotide sequence