Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3035 and GFF3036 are separated by 9 nucleotides GFF3036 and GFF3037 are separated by 6 nucleotides GFF3037 and GFF3038 are separated by 11 nucleotides
GFF3035 - Ferrichrome-iron receptor, at 467,378 to 469,573
GFF3035
GFF3036 - no description, at 469,583 to 470,005
GFF3036
GFF3037 - no description, at 470,012 to 470,479
GFF3037
GFF3038 - hypothetical protein, at 470,491 to 471,174
GFF3038
Position (kb) 469
470
471 Strain fitness (log2 ratio) -1
0
1
2 at 468.614 kb on + strand, within GFF3035 at 468.632 kb on + strand, within GFF3035 at 468.847 kb on + strand, within GFF3035 at 468.848 kb on - strand, within GFF3035 at 468.848 kb on - strand, within GFF3035 at 468.851 kb on + strand, within GFF3035 at 468.920 kb on + strand, within GFF3035 at 468.929 kb on + strand, within GFF3035 at 468.929 kb on + strand, within GFF3035 at 468.930 kb on - strand, within GFF3035 at 468.930 kb on - strand, within GFF3035 at 468.930 kb on - strand, within GFF3035 at 469.016 kb on + strand, within GFF3035 at 469.095 kb on - strand, within GFF3035 at 469.139 kb on + strand, within GFF3035 at 469.139 kb on + strand, within GFF3035 at 469.241 kb on + strand, within GFF3035 at 469.242 kb on - strand, within GFF3035 at 469.242 kb on - strand, within GFF3035 at 469.299 kb on - strand, within GFF3035 at 469.346 kb on + strand, within GFF3035 at 469.347 kb on - strand, within GFF3035 at 469.425 kb on - strand at 469.517 kb on + strand at 469.517 kb on + strand at 469.571 kb on + strand at 469.710 kb on - strand, within GFF3036 at 469.721 kb on + strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.895 kb on + strand, within GFF3036 at 469.896 kb on - strand, within GFF3036 at 470.351 kb on + strand, within GFF3037 at 470.351 kb on + strand, within GFF3037 at 470.351 kb on + strand, within GFF3037 at 470.352 kb on - strand, within GFF3037 at 470.812 kb on + strand, within GFF3038 at 470.848 kb on + strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.988 kb on - strand, within GFF3038
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 468,614 + GFF3035 0.56 -0.4 468,632 + GFF3035 0.57 -0.5 468,847 + GFF3035 0.67 -0.4 468,848 - GFF3035 0.67 +0.1 468,848 - GFF3035 0.67 +0.2 468,851 + GFF3035 0.67 +0.2 468,920 + GFF3035 0.70 -0.4 468,929 + GFF3035 0.71 -0.4 468,929 + GFF3035 0.71 +0.7 468,930 - GFF3035 0.71 -1.0 468,930 - GFF3035 0.71 -0.2 468,930 - GFF3035 0.71 +0.1 469,016 + GFF3035 0.75 -0.2 469,095 - GFF3035 0.78 -0.4 469,139 + GFF3035 0.80 +0.6 469,139 + GFF3035 0.80 -0.4 469,241 + GFF3035 0.85 -1.2 469,242 - GFF3035 0.85 -0.3 469,242 - GFF3035 0.85 +1.0 469,299 - GFF3035 0.87 +0.2 469,346 + GFF3035 0.90 -0.3 469,347 - GFF3035 0.90 -0.3 469,425 - -1.4 469,517 + +0.2 469,517 + -0.2 469,571 + +0.4 469,710 - GFF3036 0.30 -1.1 469,721 + GFF3036 0.33 -0.9 469,743 - GFF3036 0.38 +2.2 469,743 - GFF3036 0.38 -0.7 469,743 - GFF3036 0.38 +0.6 469,895 + GFF3036 0.74 -0.2 469,896 - GFF3036 0.74 -0.3 470,351 + GFF3037 0.72 -0.4 470,351 + GFF3037 0.72 -0.3 470,351 + GFF3037 0.72 -0.4 470,352 - GFF3037 0.73 -0.3 470,812 + GFF3038 0.47 +0.7 470,848 + GFF3038 0.52 +1.7 470,950 - GFF3038 0.67 -1.1 470,950 - GFF3038 0.67 -0.3 470,950 - GFF3038 0.67 +1.6 470,988 - GFF3038 0.73 -0.2
Or see this region's nucleotide sequence