Strain Fitness in Variovorax sp. SCN45 around GFF3032

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3031 and GFF3032 are separated by 195 nucleotidesGFF3032 and GFF3033 are separated by 62 nucleotides GFF3031 - hypothetical protein, at 462,700 to 464,118 GFF3031 GFF3032 - Two-component transcriptional response regulator, LuxR family, at 464,314 to 465,069 GFF3032 GFF3033 - hypothetical protein, at 465,132 to 466,934 GFF3033 Position (kb) 464 465 466Strain fitness (log2 ratio) -2 -1 0 1at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.390 kb on - strand, within GFF3031at 463.498 kb on + strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.509 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.573 kb on + strand, within GFF3031at 463.574 kb on - strand, within GFF3031at 463.574 kb on - strand, within GFF3031at 463.687 kb on + strand, within GFF3031at 463.687 kb on + strand, within GFF3031at 463.687 kb on + strand, within GFF3031at 463.714 kb on + strand, within GFF3031at 463.715 kb on - strand, within GFF3031at 463.752 kb on + strand, within GFF3031at 463.859 kb on + strand, within GFF3031at 463.860 kb on - strand, within GFF3031at 463.889 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.899 kb on + strand, within GFF3031at 463.992 kb on + strandat 463.993 kb on - strandat 463.993 kb on - strandat 464.168 kb on + strandat 464.168 kb on + strandat 464.169 kb on - strandat 464.190 kb on + strandat 464.190 kb on + strandat 464.191 kb on - strandat 464.191 kb on - strandat 464.616 kb on - strand, within GFF3032at 464.689 kb on + strand, within GFF3032at 464.689 kb on + strand, within GFF3032at 464.689 kb on + strand, within GFF3032at 464.741 kb on + strand, within GFF3032at 464.741 kb on + strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 465.259 kb on - strandat 465.339 kb on + strand, within GFF3033at 465.339 kb on + strand, within GFF3033at 465.339 kb on + strand, within GFF3033at 465.339 kb on + strand, within GFF3033at 465.340 kb on - strand, within GFF3033at 465.340 kb on - strand, within GFF3033at 465.513 kb on + strand, within GFF3033at 465.825 kb on + strand, within GFF3033at 465.825 kb on + strand, within GFF3033at 465.825 kb on + strand, within GFF3033at 465.825 kb on + strand, within GFF3033at 465.826 kb on - strand, within GFF3033at 465.826 kb on - strand, within GFF3033at 465.936 kb on + strand, within GFF3033at 465.937 kb on - strand, within GFF3033at 465.969 kb on + strand, within GFF3033at 465.969 kb on + strand, within GFF3033at 465.969 kb on + strand, within GFF3033at 465.969 kb on + strand, within GFF3033at 466.058 kb on - strand, within GFF3033

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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463,385 + GFF3031 0.48 +0.0
463,385 + GFF3031 0.48 -0.3
463,385 + GFF3031 0.48 -0.8
463,385 + GFF3031 0.48 +1.2
463,386 - GFF3031 0.48 -1.1
463,386 - GFF3031 0.48 -1.4
463,386 - GFF3031 0.48 -0.2
463,386 - GFF3031 0.48 -0.4
463,386 - GFF3031 0.48 -0.1
463,389 + GFF3031 0.49 -0.1
463,389 + GFF3031 0.49 +0.3
463,389 + GFF3031 0.49 +1.6
463,390 - GFF3031 0.49 +1.3
463,498 + GFF3031 0.56 +0.6
463,499 - GFF3031 0.56 +1.4
463,499 - GFF3031 0.56 -0.6
463,499 - GFF3031 0.56 +1.1
463,509 - GFF3031 0.57 -0.1
463,572 - GFF3031 0.61 +0.3
463,572 - GFF3031 0.61 -0.5
463,572 - GFF3031 0.61 +1.1
463,573 + GFF3031 0.62 -0.6
463,574 - GFF3031 0.62 +0.8
463,574 - GFF3031 0.62 -0.1
463,687 + GFF3031 0.70 +0.9
463,687 + GFF3031 0.70 -0.2
463,687 + GFF3031 0.70 +0.4
463,714 + GFF3031 0.71 +0.0
463,715 - GFF3031 0.72 -0.4
463,752 + GFF3031 0.74 -0.2
463,859 + GFF3031 0.82 -0.4
463,860 - GFF3031 0.82 +1.3
463,889 + GFF3031 0.84 -1.6
463,893 + GFF3031 0.84 +0.4
463,893 + GFF3031 0.84 +0.0
463,893 + GFF3031 0.84 -1.4
463,893 + GFF3031 0.84 +1.6
463,894 - GFF3031 0.84 +0.2
463,894 - GFF3031 0.84 +0.2
463,894 - GFF3031 0.84 +0.5
463,894 - GFF3031 0.84 +0.0
463,894 - GFF3031 0.84 -1.4
463,894 - GFF3031 0.84 -0.7
463,894 - GFF3031 0.84 -0.2
463,894 - GFF3031 0.84 +1.2
463,894 - GFF3031 0.84 -1.0
463,894 - GFF3031 0.84 -0.1
463,894 - GFF3031 0.84 -1.2
463,894 - GFF3031 0.84 -0.1
463,899 + GFF3031 0.84 -0.4
463,992 + -0.1
463,993 - -1.0
463,993 - -0.1
464,168 + -1.0
464,168 + -0.4
464,169 - -0.1
464,190 + +0.4
464,190 + -0.3
464,191 - -0.7
464,191 - +0.0
464,616 - GFF3032 0.40 +1.2
464,689 + GFF3032 0.50 -0.1
464,689 + GFF3032 0.50 -0.3
464,689 + GFF3032 0.50 +0.7
464,741 + GFF3032 0.56 -0.7
464,741 + GFF3032 0.56 -2.0
464,742 - GFF3032 0.57 -0.3
464,742 - GFF3032 0.57 +0.6
464,742 - GFF3032 0.57 +1.3
464,742 - GFF3032 0.57 +0.4
464,742 - GFF3032 0.57 -0.0
465,259 - -0.4
465,339 + GFF3033 0.11 -0.5
465,339 + GFF3033 0.11 +0.2
465,339 + GFF3033 0.11 +0.6
465,339 + GFF3033 0.11 -0.4
465,340 - GFF3033 0.12 +0.1
465,340 - GFF3033 0.12 -0.7
465,513 + GFF3033 0.21 +0.0
465,825 + GFF3033 0.38 -0.9
465,825 + GFF3033 0.38 +0.7
465,825 + GFF3033 0.38 -0.3
465,825 + GFF3033 0.38 +0.2
465,826 - GFF3033 0.38 -0.4
465,826 - GFF3033 0.38 +0.6
465,936 + GFF3033 0.45 +0.4
465,937 - GFF3033 0.45 -0.7
465,969 + GFF3033 0.46 -0.1
465,969 + GFF3033 0.46 +0.7
465,969 + GFF3033 0.46 -1.3
465,969 + GFF3033 0.46 -0.5
466,058 - GFF3033 0.51 -1.7

Or see this region's nucleotide sequence