Strain Fitness in Variovorax sp. SCN45 around GFF297

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF295 and GFF296 are separated by 10 nucleotidesGFF296 and GFF297 are separated by 3 nucleotidesGFF297 and GFF298 overlap by 4 nucleotidesGFF298 and GFF299 overlap by 4 nucleotides GFF295 - Ribonuclease G, at 329,644 to 331,170 GFF295 GFF296 - Septum formation protein Maf, at 331,181 to 331,783 GFF296 GFF297 - FIG00978250: hypothetical protein, at 331,787 to 332,500 GFF297 GFF298 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177), at 332,497 to 332,964 GFF298 GFF299 - Ribosomal silencing factor RsfA, at 332,961 to 333,647 GFF299 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.049 kb on + strandat 331.050 kb on - strandat 331.050 kb on - strandat 331.186 kb on + strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.238 kb on + strandat 331.251 kb on + strand, within GFF296at 331.252 kb on - strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.342 kb on - strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.767 kb on + strandat 331.767 kb on + strandat 331.767 kb on + strandat 331.768 kb on - strandat 331.768 kb on - strandat 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.105 kb on + strand, within GFF297at 332.106 kb on - strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297at 332.454 kb on + strandat 332.454 kb on + strandat 332.454 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.543 kb on + strandat 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.897 kb on + strand, within GFF298at 332.897 kb on + strand, within GFF298at 332.898 kb on - strand, within GFF298at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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331,049 + +1.4
331,050 - +2.2
331,050 - -1.1
331,186 + +1.4
331,187 - -0.0
331,187 - +0.1
331,187 - -0.3
331,187 - +0.1
331,238 + +0.4
331,251 + GFF296 0.12 -1.2
331,252 - GFF296 0.12 -1.6
331,302 + GFF296 0.20 +1.4
331,302 + GFF296 0.20 +0.4
331,302 + GFF296 0.20 +0.4
331,302 + GFF296 0.20 +0.4
331,302 + GFF296 0.20 -0.9
331,303 - GFF296 0.20 -0.5
331,303 - GFF296 0.20 +0.0
331,303 - GFF296 0.20 -0.1
331,303 - GFF296 0.20 -0.3
331,303 - GFF296 0.20 +1.4
331,303 - GFF296 0.20 +0.3
331,303 - GFF296 0.20 -0.2
331,303 - GFF296 0.20 -0.7
331,342 - GFF296 0.27 +0.4
331,632 + GFF296 0.75 -2.1
331,632 + GFF296 0.75 +0.6
331,632 + GFF296 0.75 -0.0
331,632 + GFF296 0.75 +0.4
331,632 + GFF296 0.75 -3.1
331,632 + GFF296 0.75 +0.2
331,633 - GFF296 0.75 -0.6
331,633 - GFF296 0.75 -0.6
331,633 - GFF296 0.75 -0.3
331,633 - GFF296 0.75 -0.4
331,633 - GFF296 0.75 -0.3
331,633 - GFF296 0.75 -2.1
331,633 - GFF296 0.75 +0.5
331,633 - GFF296 0.75 +0.3
331,703 + GFF296 0.87 -0.0
331,703 + GFF296 0.87 +0.1
331,703 + GFF296 0.87 -0.0
331,704 - GFF296 0.87 -0.5
331,704 - GFF296 0.87 +0.6
331,704 - GFF296 0.87 -0.3
331,704 - GFF296 0.87 -0.3
331,767 + -1.0
331,767 + -1.7
331,767 + -0.4
331,768 - -1.6
331,768 - -0.1
332,095 + GFF297 0.43 +0.3
332,095 + GFF297 0.43 +0.9
332,095 + GFF297 0.43 -0.5
332,095 + GFF297 0.43 +0.4
332,095 + GFF297 0.43 -0.8
332,096 - GFF297 0.43 +0.2
332,096 - GFF297 0.43 -1.6
332,096 - GFF297 0.43 -1.1
332,105 + GFF297 0.45 -0.1
332,106 - GFF297 0.45 -0.4
332,148 + GFF297 0.51 -1.1
332,148 + GFF297 0.51 +0.1
332,148 + GFF297 0.51 -0.3
332,148 + GFF297 0.51 -0.5
332,148 + GFF297 0.51 -0.3
332,148 + GFF297 0.51 -0.3
332,148 + GFF297 0.51 +0.9
332,148 + GFF297 0.51 +1.0
332,148 + GFF297 0.51 -0.2
332,148 + GFF297 0.51 -0.3
332,148 + GFF297 0.51 -0.7
332,149 - GFF297 0.51 -0.5
332,149 - GFF297 0.51 -0.3
332,149 - GFF297 0.51 -1.1
332,149 - GFF297 0.51 -0.3
332,150 - GFF297 0.51 -0.4
332,150 - GFF297 0.51 -0.8
332,454 + -0.7
332,454 + -2.1
332,454 + -0.2
332,510 + -1.1
332,510 + -2.1
332,510 + +1.2
332,510 + -1.2
332,510 + +0.0
332,511 - +0.1
332,511 - -1.3
332,511 - +1.3
332,511 - -0.5
332,543 + -2.1
332,810 + GFF298 0.67 -0.8
332,810 + GFF298 0.67 -0.4
332,810 + GFF298 0.67 -0.7
332,810 + GFF298 0.67 -0.1
332,810 + GFF298 0.67 -1.5
332,810 + GFF298 0.67 +0.5
332,810 + GFF298 0.67 -1.2
332,811 - GFF298 0.67 +0.3
332,811 - GFF298 0.67 -0.9
332,811 - GFF298 0.67 +0.6
332,811 - GFF298 0.67 -1.1
332,897 + GFF298 0.85 -0.5
332,897 + GFF298 0.85 -0.9
332,898 - GFF298 0.86 -0.6
333,331 + GFF299 0.54 -1.0
333,331 + GFF299 0.54 +0.6
333,331 + GFF299 0.54 -0.9
333,331 + GFF299 0.54 -0.6
333,331 + GFF299 0.54 -0.6
333,331 + GFF299 0.54 -0.0
333,331 + GFF299 0.54 +0.1
333,331 + GFF299 0.54 +0.9
333,331 + GFF299 0.54 +0.1
333,331 + GFF299 0.54 -0.9
333,331 + GFF299 0.54 +0.0
333,331 + GFF299 0.54 +0.1
333,331 + GFF299 0.54 -1.0
333,331 + GFF299 0.54 +0.7
333,332 - GFF299 0.54 +0.3
333,332 - GFF299 0.54 -0.7
333,332 - GFF299 0.54 +1.4
333,332 - GFF299 0.54 -1.1
333,332 - GFF299 0.54 -0.9
333,332 - GFF299 0.54 +0.2
333,332 - GFF299 0.54 +0.7
333,332 - GFF299 0.54 +0.7
333,332 - GFF299 0.54 -0.7
333,332 - GFF299 0.54 -1.9
333,332 - GFF299 0.54 +0.6
333,332 - GFF299 0.54 -1.9
333,334 + GFF299 0.54 -1.1
333,334 + GFF299 0.54 -0.1
333,334 + GFF299 0.54 +0.1
333,334 + GFF299 0.54 -0.6
333,334 + GFF299 0.54 +0.1
333,334 + GFF299 0.54 -0.7
333,334 + GFF299 0.54 -1.5
333,334 + GFF299 0.54 -0.0
333,335 - GFF299 0.54 +0.9
333,335 - GFF299 0.54 +0.4
333,335 - GFF299 0.54 -0.3
333,335 - GFF299 0.54 -2.3
333,335 - GFF299 0.54 -1.9

Or see this region's nucleotide sequence