Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2901 and GFF2903 overlap by 4 nucleotides GFF2903 and GFF2902 overlap by 6 nucleotides
GFF2901 - FIG00347713: hypothetical protein, at 327,089 to 328,222
GFF2901
GFF2903 - no description, at 328,219 to 328,338
GFF2903
GFF2902 - ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes), at 328,333 to 329,859
GFF2902
Position (kb) 328
329 Strain fitness (log2 ratio) -1
0
1 at 327.454 kb on - strand, within GFF2901 at 327.649 kb on - strand, within GFF2901 at 327.649 kb on - strand, within GFF2901 at 328.119 kb on + strand at 328.119 kb on + strand at 328.283 kb on - strand, within GFF2903 at 328.297 kb on + strand, within GFF2903 at 328.318 kb on + strand, within GFF2903 at 328.320 kb on + strand, within GFF2903 at 328.320 kb on + strand, within GFF2903 at 328.320 kb on + strand, within GFF2903 at 328.320 kb on + strand, within GFF2903 at 328.320 kb on + strand, within GFF2903 at 328.321 kb on - strand, within GFF2903 at 328.321 kb on - strand, within GFF2903 at 328.459 kb on + strand at 328.459 kb on + strand at 328.459 kb on + strand at 328.459 kb on + strand at 328.459 kb on + strand at 328.460 kb on - strand at 328.552 kb on + strand, within GFF2902 at 328.552 kb on + strand, within GFF2902 at 328.552 kb on + strand, within GFF2902 at 328.553 kb on - strand, within GFF2902 at 328.553 kb on - strand, within GFF2902 at 328.585 kb on + strand, within GFF2902 at 328.594 kb on + strand, within GFF2902 at 328.717 kb on + strand, within GFF2902 at 328.717 kb on + strand, within GFF2902 at 328.907 kb on - strand, within GFF2902 at 328.907 kb on - strand, within GFF2902 at 328.941 kb on - strand, within GFF2902 at 328.948 kb on + strand, within GFF2902 at 328.948 kb on + strand, within GFF2902 at 328.948 kb on + strand, within GFF2902 at 328.948 kb on + strand, within GFF2902 at 328.948 kb on + strand, within GFF2902 at 328.949 kb on - strand, within GFF2902 at 328.949 kb on - strand, within GFF2902 at 328.949 kb on - strand, within GFF2902 at 329.008 kb on + strand, within GFF2902 at 329.008 kb on + strand, within GFF2902 at 329.009 kb on - strand, within GFF2902 at 329.009 kb on - strand, within GFF2902 at 329.020 kb on + strand, within GFF2902 at 329.021 kb on - strand, within GFF2902 at 329.038 kb on + strand, within GFF2902 at 329.038 kb on + strand, within GFF2902 at 329.038 kb on + strand, within GFF2902 at 329.038 kb on + strand, within GFF2902 at 329.039 kb on - strand, within GFF2902 at 329.039 kb on - strand, within GFF2902 at 329.313 kb on - strand, within GFF2902 at 329.313 kb on - strand, within GFF2902 at 329.313 kb on - strand, within GFF2902
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 327,454 - GFF2901 0.32 -0.1 327,649 - GFF2901 0.49 +0.2 327,649 - GFF2901 0.49 -0.3 328,119 + +0.2 328,119 + +0.6 328,283 - GFF2903 0.53 -1.2 328,297 + GFF2903 0.65 -1.6 328,318 + GFF2903 0.82 +0.2 328,320 + GFF2903 0.84 +0.0 328,320 + GFF2903 0.84 -0.5 328,320 + GFF2903 0.84 -0.9 328,320 + GFF2903 0.84 +0.0 328,320 + GFF2903 0.84 -0.5 328,321 - GFF2903 0.85 -0.7 328,321 - GFF2903 0.85 -0.2 328,459 + +1.0 328,459 + +0.0 328,459 + -1.3 328,459 + -0.2 328,459 + +0.7 328,460 - +0.2 328,552 + GFF2902 0.14 +0.5 328,552 + GFF2902 0.14 -0.1 328,552 + GFF2902 0.14 -1.2 328,553 - GFF2902 0.14 -0.4 328,553 - GFF2902 0.14 +0.1 328,585 + GFF2902 0.17 -0.1 328,594 + GFF2902 0.17 -0.1 328,717 + GFF2902 0.25 -0.4 328,717 + GFF2902 0.25 +1.3 328,907 - GFF2902 0.38 -0.2 328,907 - GFF2902 0.38 -0.4 328,941 - GFF2902 0.40 -0.5 328,948 + GFF2902 0.40 -0.1 328,948 + GFF2902 0.40 -0.3 328,948 + GFF2902 0.40 +0.5 328,948 + GFF2902 0.40 -0.6 328,948 + GFF2902 0.40 -0.7 328,949 - GFF2902 0.40 -0.2 328,949 - GFF2902 0.40 +0.4 328,949 - GFF2902 0.40 -0.2 329,008 + GFF2902 0.44 +0.6 329,008 + GFF2902 0.44 +0.0 329,009 - GFF2902 0.44 -0.5 329,009 - GFF2902 0.44 -0.2 329,020 + GFF2902 0.45 +0.0 329,021 - GFF2902 0.45 -0.6 329,038 + GFF2902 0.46 +1.1 329,038 + GFF2902 0.46 -0.6 329,038 + GFF2902 0.46 -1.1 329,038 + GFF2902 0.46 +0.0 329,039 - GFF2902 0.46 +0.9 329,039 - GFF2902 0.46 -0.3 329,313 - GFF2902 0.64 -0.5 329,313 - GFF2902 0.64 +0.9 329,313 - GFF2902 0.64 +0.7
Or see this region's nucleotide sequence